[FIX] Segfault in forward computation #1913
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| name: PullRequest | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| MinQtDynamic: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 3 | |
| matrix: | |
| qt: [5.10.1] | |
| os: [ubuntu-20.04, macos-11, windows-2019] | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v3 | |
| - name: Install Python 3.7 version | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.7' | |
| architecture: 'x64' | |
| - name: Install BrainFlow and LSL submodules | |
| run: | | |
| git submodule update --init src/applications/mne_scan/plugins/brainflowboard/brainflow | |
| git submodule update --init src/applications/mne_scan/plugins/lsladapter/liblsl | |
| - name: Install Qt (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-20.04') || (matrix.os == 'macos-11') | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt }} | |
| modules: qtcharts | |
| - name: Install Qt (Windows) | |
| if: matrix.os == 'windows-2019' | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt }} | |
| arch: win64_msvc2017_64 | |
| modules: qtcharts | |
| - name: Compile BrainFlow submodule (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| cd src\applications\mne_scan\plugins\brainflowboard\brainflow | |
| mkdir build | |
| cd build | |
| cmake -G "Visual Studio 16 2019" -A x64 -DMSVC_RUNTIME=dynamic -DCMAKE_SYSTEM_VERSION=8.1 -DCMAKE_INSTALL_PREFIX="$env:GITHUB_WORKSPACE\applications\mne_scan\plugins\brainflowboard\brainflow\installed" .. | |
| cmake --build . --target install --config Release | |
| - name: Compile BrainFlow submodule (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-20.04') || (matrix.os == 'macos-11') | |
| run: | | |
| cd src/applications/mne_scan/plugins/brainflowboard/brainflow | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=../installed -DCMAKE_BUILD_TYPE=Release .. | |
| cmake --build . | |
| - name: Compile LSL submodule (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| cd src\applications\mne_scan\plugins\lsladapter\liblsl | |
| mkdir build | |
| cd build | |
| cmake .. -G "Visual Studio 16 2019" -A x64 | |
| cmake --build . --config Release --target install | |
| - name: Compile LSL submodule (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-20.04') || (matrix.os == 'macos-11') | |
| run: | | |
| cd src/applications/mne_scan/plugins/lsladapter/liblsl | |
| mkdir build | |
| cd build | |
| cmake .. | |
| cmake --build . | |
| - name: Configure and compile MNE-CPP | |
| run: | | |
| ./tools/build_project.bat all | |
| - name: Deploy binaries | |
| run: | | |
| ./tools/deploy.bat dynamic pack | |
| MaxQtDynamic: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 3 | |
| matrix: | |
| qt: [5.15.2] | |
| os: [ubuntu-latest, macos-11, windows-2019] | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v3 | |
| - name: Install Python 3.7 version | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.7' | |
| architecture: 'x64' | |
| - name: Install BrainFlow and LSL submodules | |
| run: | | |
| git submodule update --init src/applications/mne_scan/plugins/brainflowboard/brainflow | |
| git submodule update --init src/applications/mne_scan/plugins/lsladapter/liblsl | |
| - name: Install Qt (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-latest') || (matrix.os == 'macos-11') | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt }} | |
| modules: qtcharts | |
| - name: Install Qt (Windows) | |
| if: matrix.os == 'windows-2019' | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: ${{ matrix.qt }} | |
| arch: win64_msvc2019_64 | |
| modules: qtcharts | |
| - name: Compile BrainFlow submodule (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| cd src\applications\mne_scan\plugins\brainflowboard\brainflow | |
| mkdir build | |
| cd build | |
| cmake -G "Visual Studio 16 2019" -A x64 -DMSVC_RUNTIME=dynamic -DCMAKE_SYSTEM_VERSION=8.1 -DCMAKE_INSTALL_PREFIX="$env:GITHUB_WORKSPACE\applications\mne_scan\plugins\brainflowboard\brainflow\installed" .. | |
| cmake --build . --target install --config Release | |
| - name: Compile BrainFlow submodule (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-latest') || (matrix.os == 'macos-11') | |
| run: | | |
| cd src/applications/mne_scan/plugins/brainflowboard/brainflow | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=../installed -DCMAKE_BUILD_TYPE=Release .. | |
| cmake --build . | |
| - name: Compile LSL submodule (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| cd src\applications\mne_scan\plugins\lsladapter\liblsl | |
| mkdir build | |
| cd build | |
| cmake .. -G "Visual Studio 16 2019" -A x64 | |
| cmake --build . --config Release --target install | |
| - name: Compile LSL submodule (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-latest') || (matrix.os == 'macos-11') | |
| run: | | |
| cd src/applications/mne_scan/plugins/lsladapter/liblsl | |
| mkdir build | |
| cd build | |
| cmake .. | |
| cmake --build . | |
| - name: Configure and compile MNE-CPP | |
| run: | | |
| ./tools/build_project.bat all | |
| - name: Deploy binaries | |
| run: | | |
| ./tools/deploy.bat dynamic pack | |
| QtStatic: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-20.04, macos-11, windows-2019] | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v3 | |
| - name: Install Python 3.7 version | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.7' | |
| architecture: 'x64' | |
| - name: Install OpenGL (Linux) | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| sudo add-apt-repository "deb http://security.ubuntu.com/ubuntu xenial-security main" | |
| sudo apt-get update -q | |
| sudo apt-get install build-essential libgl1-mesa-dev libicu55 | |
| - name: Install Qt (Linux) | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| # Download the pre-built static version of Qt, which was created with the generateBinaries.yml workflow | |
| wget -O qt5_5152_static_binaries_linux.tar.gz https://www.dropbox.com/s/tje7jp6tsn2dxdd/qt5_5152_static_binaries_linux.tar.gz?dl=0 | |
| mkdir ../Qt5_binaries | |
| tar xvzf qt5_5152_static_binaries_linux.tar.gz -C ../ -P | |
| - name: Install Qt (MacOS) | |
| if: matrix.os == 'macos-11' | |
| run: | | |
| # Download the pre-built static version of Qt, which was created with the generateBinaries.yml workflow | |
| wget -O qt5_5152_static_binaries_macos.tar.gz https://www.dropbox.com/s/ccigarxk40wlxq0/qt5_5152_static_binaries_macos.tar.gz?dl=1 | |
| tar xvzf qt5_5152_static_binaries_macos.tar.gz -P | |
| - name: Install Qt (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| # Download the pre-built static version of Qt, which was created with the generateBinaries.yml workflow | |
| Invoke-WebRequest https://www.dropbox.com/s/47s49smjg499gnm/qt5_5152_static_binaries_win.zip?dl=1 -OutFile .\qt5_5152_static_binaries_win.zip | |
| expand-archive -path "qt5_5152_static_binaries_win.zip" -destinationpath "..\" | |
| - name: Configure and compile MNE-CPP (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-20.04') || (matrix.os == 'macos-11') | |
| run: | | |
| export QT_DIR="$(pwd)/../Qt5_binaries/lib/cmake/Qt5" | |
| export Qt5_DIR="$(pwd)/../Qt5_binaries/lib/cmake/Qt5" | |
| ./tools/build_project.bat static all | |
| - name: Configure and compile MNE-CPP (Windows) | |
| if: matrix.os == 'windows-2019' | |
| run: | | |
| cmd.exe /c "call `"C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat`" && set > %temp%\vcvars.txt" | |
| Get-Content "$env:temp\vcvars.txt" | Foreach-Object { if ($_ -match "^(.*?)=(.*)$") { Set-Content "env:\$($matches[1])" $matches[2] } } | |
| $env:QT_DIR += "$PWD\..\Qt5_binaries\lib\cmake\Qt5" | |
| $env:Qt5_DIR += "$PWD\..\Qt5_binaries\lib\cmake\Qt5" | |
| ./tools/build_project.bat static all | |
| - name: Deploy binaries | |
| run: | | |
| ./tools/deploy.bat static pack | |
| Tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-20.04, macos-11, windows-2019] | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v3 | |
| - name: Clone mne-cpp test data | |
| run: git clone https://github.com/mne-tools/mne-cpp-test-data.git resources/data/mne-cpp-test-data | |
| - name: Install Python 3.7 version | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.7' | |
| architecture: 'x64' | |
| - name: Install Codecov | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| curl -Os https://uploader.codecov.io/latest/linux/codecov | |
| chmod +x codecov | |
| echo "${pwd}" >> $GITHUB_PATH | |
| - name: Install Qt (Linux|MacOS) | |
| if: (matrix.os == 'ubuntu-20.04') || (matrix.os == 'macos-11') | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: 5.15.2 | |
| modules: qtcharts | |
| - name: Install Qt (Windows) | |
| if: matrix.os == 'windows-2019' | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: 5.15.2 | |
| arch: win64_msvc2019_64 | |
| modules: qtcharts | |
| - name: Configure and compile MNE-CPP | |
| if: (matrix.os == 'macos-11') || (matrix.os == 'windows-2019') | |
| run: | | |
| ./tools/build_project.bat all | |
| - name: Configure and compile MNE-CPP | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| ./tools/build_project.bat coverage all | |
| - name: Run tests (Linux) | |
| if: matrix.os == 'ubuntu-20.04' | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| QTEST_FUNCTION_TIMEOUT: 900000 | |
| run: | | |
| ./tools/test_all.bat verbose withCoverage | |
| - name: Run tests (MacOS) | |
| if: matrix.os == 'macos-11' | |
| env: | |
| QTEST_FUNCTION_TIMEOUT: 900000 | |
| run: | | |
| ./tools/test_all.bat verbose | |
| - name: Run tests (Windows) | |
| if: matrix.os == 'windows-2019' | |
| env: | |
| QTEST_FUNCTION_TIMEOUT: 900000 | |
| run: | | |
| ./tools/test_all.bat Release verbose | |
| Doxygen: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Clone repository | |
| uses: actions/checkout@v3 | |
| - name: Install Qt Dev Tools, Doxygen and Graphviz | |
| run: | | |
| sudo apt-get update -q | |
| sudo apt-get install -q qttools5-dev-tools doxygen graphviz | |
| - name: Run Doxygen and package result | |
| run: | | |
| cd doc/doxygen | |
| doxygen mne-cpp_doxyfile |