[pre-commit.ci] pre-commit autoupdate #107
Workflow file for this run
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| name: 'tests' | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| jobs: | |
| # PIP + non-default stim channel + log level info | |
| job: | |
| name: '${{ matrix.os }} / ${{ matrix.kind }} / ${{ matrix.mne }}' | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| mne: stable | |
| kind: pip | |
| python: "3.9" # oldest | |
| - os: ubuntu-latest | |
| mne: dev | |
| kind: pip | |
| python: "3.12" # newest | |
| - os: macos-14 | |
| mne: dev | |
| kind: conda | |
| python: "3.12" | |
| - os: windows-latest | |
| mne: dev | |
| kind: conda | |
| python: "3.10" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| if: matrix.kind == 'pip' | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: mne-nirs | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| if: matrix.kind == 'conda' | |
| - run: pip install -r requirements_testing.txt | |
| - run: git clone https://github.com/mne-tools/mne-python | |
| - run: pip install --upgrade --pre -e ./mne-python git+https://github.com/nilearn/nilearn | |
| if: matrix.mne == 'dev' | |
| name: Install MNE and nilearn dev | |
| # Tables on PyPI is not NumPy 2.0 compatible | |
| - run: pip install --only-binary="tables" --extra-index-url "https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" "tables>=3.9.3.dev0" | |
| - run: pip install --upgrade --pre --only-binary=":all:" --index-url "https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" "numpy>=2.0.0rc1" scipy h5py matplotlib pandas scikit-learn statsmodels "tables>=3.9.3.dev0" | |
| if: matrix.mne == 'dev' && startsWith(matrix.os, 'ubuntu') | |
| name: Install numpy, scipy, nilearn pre | |
| - run: pip install -ve . | |
| - run: mne sys_info | |
| - run: ./tools/get_testing_version.sh | |
| working-directory: mne-python | |
| - uses: actions/cache@v4 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| - run: ./tools/github_actions_download.sh | |
| - run: pytest --cov=mne_nirs --cov-report xml -vv -m "not examples" "mne_nirs/" | |
| - uses: codecov/codecov-action@v4 | |
| if: success() |