Add quick fix for #654

mobie · Mar 23, 2022 · a2b6dfd · a2b6dfd
1 parent e58d251
commit a2b6dfd
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/pom.xml b/pom.xml
@@ -11,6 +11,7 @@
 	<artifactId>mobie-viewer-fiji</artifactId>
 	<version>2.1.8-SNAPSHOT</version>
 
+	<!-- mvn clean compile -Dmaven.test.skip=true -->
 	<!-- mvn clean install -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-MoBIE-beta.app -->
 	<!-- mvn clean install -Dmaven.test.skip=true -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-MoBIE-beta.app -->
 	<!-- mvn clean install -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-MoBIE.app -->

diff --git a/src/main/java/org/embl/mobie/viewer/command/OpenOMEZARRFromS3Command.java b/src/main/java/org/embl/mobie/viewer/command/OpenOMEZARRFromS3Command.java
@@ -13,13 +13,14 @@
 public class OpenOMEZARRFromS3Command implements Command {
 
     @Parameter(label = "S3 URL")
-    public String s3URL = "https://s3.embl.de/i2k-2020/em-raw.ome.zarr";
+    public String s3URL = "https://s3.embl.de/i2k-2020/platy-raw.ome.zarr";
 
     @Parameter ( label = "Log chunk loading" )
     public boolean logChunkLoading = false;
 
     protected static void openAndShow(String s3URL) throws IOException {
-        SpimData spimData = OMEZarrS3Opener.readURL(s3URL);
+        s3URL = s3URL.replaceAll( "\\s", "" ); // TODO: Maybe add general function and/or put deeper into code: https://github.com/mobie/mobie-viewer-fiji/issues/654
+        SpimData spimData = OMEZarrS3Opener.readURL(s3URL.trim());
         final OMEZarrViewer viewer = new OMEZarrViewer(spimData);
         viewer.show();
     }

diff --git a/src/main/java/org/embl/mobie/viewer/command/OpenOMEZARRFromS3WithCredentialsCommand.java b/src/main/java/org/embl/mobie/viewer/command/OpenOMEZARRFromS3WithCredentialsCommand.java
@@ -23,7 +23,7 @@ public class OpenOMEZARRFromS3WithCredentialsCommand extends OpenOMEZARRFromS3Co
     @Override
     public void run() {
         try {
-            S3Utils.setS3AccessAndSecretKey( new String[]{ s3AccessKey, s3SecretKey} );
+            S3Utils.setS3AccessAndSecretKey( new String[]{ s3AccessKey, s3SecretKey } );
             openAndShow(s3URL);
         } catch (IOException e) {
             e.printStackTrace();