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  • New York University
  • NYC

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  1. gencorefacility/variant-calling-pipeline-gatk4 gencorefacility/variant-calling-pipeline-gatk4 Public

    Variant Calling Pipeline Using GATK4 and Nextflow

    Nextflow 52 48

  2. gencorefacility/reform gencorefacility/reform Public

    Modify existing reference fasta and gff3/gtf files to include a new sequence

    Python 29 5

  3. gencorefacility/r-notebooks gencorefacility/r-notebooks Public

    Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

    17 25

  4. gencorefacility/variant-calling-pipeline gencorefacility/variant-calling-pipeline Public

    HPC based pipelines for variant calling using GATK

    Shell 17 24

  5. gencorefacility/covid19 gencorefacility/covid19 Public

    Variant Analysis Pipeline for COVID19

    Nextflow 4 1

  6. NCBI-Hackathons/AssesSV NCBI-Hackathons/AssesSV Public

    HTML 7 1