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  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  3. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 1

  4. dnanexus_ED_cnv_calling dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    Shell 1

  5. seglh-naming seglh-naming Public

    SEGLH naming schemes

    Python 1 1

  6. WGS_puberty_CNVs WGS_puberty_CNVs Public

    Scripts for filtering WGS Puberty SV data

    1

Repositories

Showing 10 of 190 repositories
  • automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    moka-guys/automate_demultiplex’s past year of commit activity
    Python 1 2 14 0 Updated Dec 25, 2024
  • mokabed Public

    Generates BED files

    moka-guys/mokabed’s past year of commit activity
    Python 0 0 13 0 Updated Dec 20, 2024
  • bedmakerGUI Public
    moka-guys/bedmakerGUI’s past year of commit activity
    Python 0 0 1 0 Updated Dec 19, 2024
  • workstation_crontab Public
    moka-guys/workstation_crontab’s past year of commit activity
    0 0 1 0 Updated Dec 16, 2024
  • fhprs Public

    FH Polygenic risk score

    moka-guys/fhprs’s past year of commit activity
    Python 0 0 1 0 Updated Dec 9, 2024
  • SNP_haplotyper Public

    BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data

    moka-guys/SNP_haplotyper’s past year of commit activity
    Python 0 0 1 3 Updated Nov 28, 2024
  • dnanexus_ED_readcount_analysis Public

    This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.

    moka-guys/dnanexus_ED_readcount_analysis’s past year of commit activity
    Shell 0 0 2 0 Updated Nov 20, 2024
  • sophiaCLI_automate Public

    AOI script for automation of Sophia CLI requests

    moka-guys/sophiaCLI_automate’s past year of commit activity
    Python 0 0 0 0 Updated Nov 19, 2024
  • dnanexus_mokapipe_workflow Public

    Workflow description of DNANexus workflow GATK3.5

    moka-guys/dnanexus_mokapipe_workflow’s past year of commit activity
    0 0 0 0 Updated Nov 18, 2024
  • dnanexus_happy Public

    DNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval

    moka-guys/dnanexus_happy’s past year of commit activity
    Shell 0 0 2 0 Updated Nov 13, 2024
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