dxapp.json

{
    "name": "oncodeep_upload_v1.0.0",
    "summary": "File upload to Oncodeep SFTP server",
    "properties": {
        "github release": "v1.0.0"
    },
    "dxapi": "1.0.0",
    "inputSpec": [
        {
            "name": "file_to_upload",
            "label": "File to upload to SFTP server",
            "class": "file",
            "help": "File to upload to SFTP server. Could be fastq, could be MasterdataFile",
            "optional": false
        },
        {
            "name": "run_identifier",
            "label": "Identifier for the run",
            "class": "string",
            "help": "Identifier for the run, for example OKD1234. Specifies the subfolder name on the SFTP server",
            "optional": false
        },
        {
            "name": "account_type",
            "label": "Production or validation account",
            "class": "string",
            "choices": [
                "Production",
                "Validation"
            ],
            "help": "Select whether you would like to upload to the production or validation sftp server",
            "optional": false
        }
    ],
    "outputSpec": [
        {
            "name": "logfile",
            "label": "logfile",
            "class": "file",
            "help": "Log file for audit trail",
            "optional": false
        }
    ],
    "runSpec": {
        "execDepends": [],
        "assetDepends": [],
        "systemRequirements": {
            "*": {
                "instanceType": "mem1_ssd1_v2_x2"
            }
        },
        "file": "src/code.sh",
        "release": "20.04",
        "version": "0",
        "interpreter": "bash",
        "distribution": "Ubuntu"
    },
    "access": {
        "allProjects": "UPLOAD",
        "network": [
            "*"
        ]
    }
}