Merge pull request #572 from monarch-initiative/develop

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monarch-initiative · Jun 18, 2024 · 8ef746a · 8ef746a
2 parents 0b790b6 + ecb6386
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diff --git a/src/ontology/external/nando-mappings.robot.owl b/src/ontology/external/nando-mappings.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-13/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-17/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/nord.robot.owl b/src/ontology/external/nord.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-13/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-17/nord.robot.owl"/>
     </owl:Ontology>
 
 
@@ -134301,6 +134301,20 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MONDO_0020654 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0020654">
+        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/mondo#nord_rare"/>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MONDO_0020654"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/mondo#nord_rare"/>
+        <oboInOwl:source>MONDO:NORD</oboInOwl:source>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MONDO_0020657 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0020657">

diff --git a/src/ontology/external/nord.robot.tsv b/src/ontology/external/nord.robot.tsv
@@ -1360,6 +1360,7 @@ MONDO:0020667					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.ob
 MONDO:0020660					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
 MONDO:0020659					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
 MONDO:0020657					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
+MONDO:0020654					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
 MONDO:0020646					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
 MONDO:0020640					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD
 MONDO:0020631					http://purl.obolibrary.org/obo/mondo#NORD_LABEL	http://purl.obolibrary.org/obo/mondo#nord_rare		MONDO:NORD

diff --git a/src/ontology/external/ordo-subsets.robot.owl b/src/ontology/external/ordo-subsets.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-13/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-06-17/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/omo_import.owl b/src/ontology/imports/omo_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/mondo-ingest/imports/omo_import.owl>
-<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-06-13/imports/omo_import.owl>
+<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-06-17/imports/omo_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo.owl>)
-Annotation(owl:versionInfo "2024-06-13")
+Annotation(owl:versionInfo "2024-06-17")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000031>))
 Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000027>))

diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/mondo-ingest/imports/ro_import.owl>
-<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-06-13/imports/ro_import.owl>
+<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-06-17/imports/ro_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2024-04-24/ro.owl>)
-Annotation(owl:versionInfo "2024-06-13")
+Annotation(owl:versionInfo "2024-06-17")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

diff --git a/src/ontology/lexmatch/README.md b/src/ontology/lexmatch/README.md
@@ -3,10 +3,10 @@
 * mondo-only: Positive mappings in MONDO not caught by the lexical mapping pipeline
 * split-mapping-set: Unmapped mappings broken down by predicate_id
 ## Summary of mappings:
- * Number of mappings in [`unmapped_doid_lex`](unmapped_doid_lex.tsv): 31
- * Number of mappings in [`unmapped_doid_lex_exact`](unmapped_doid_lex.tsv): 17
- * Number of mappings in [`unmapped_doid_mondo`](mondo-only/unmapped_doid_mondo.tsv): 36
- * Number of mappings in [`unmapped_doid_mondo_exact`](mondo-only/unmapped_doid_mondo.tsv): 36
+ * Number of mappings in [`unmapped_doid_lex`](unmapped_doid_lex.tsv): 36
+ * Number of mappings in [`unmapped_doid_lex_exact`](unmapped_doid_lex.tsv): 22
+ * Number of mappings in [`unmapped_doid_mondo`](mondo-only/unmapped_doid_mondo.tsv): 34
+ * Number of mappings in [`unmapped_doid_mondo_exact`](mondo-only/unmapped_doid_mondo.tsv): 34
  * Number of mappings in [`unmapped_icd10cm_lex`](unmapped_icd10cm_lex.tsv): 1956
  * Number of mappings in [`unmapped_icd10cm_lex_exact`](unmapped_icd10cm_lex.tsv): 1554
  * Number of mappings in [`unmapped_icd10cm_mondo`](mondo-only/unmapped_icd10cm_mondo.tsv): 3
@@ -25,33 +25,33 @@
  * Number of mappings in [`unmapped_ncit_mondo_exact`](mondo-only/unmapped_ncit_mondo.tsv): 26
  * Number of mappings in [`unmapped_omim_lex`](unmapped_omim_lex.tsv): 4
  * Number of mappings in [`unmapped_omim_lex_exact`](unmapped_omim_lex.tsv): 1
- * Number of mappings in [`unmapped_omim_mondo`](mondo-only/unmapped_omim_mondo.tsv): 123
- * Number of mappings in [`unmapped_omim_mondo_exact`](mondo-only/unmapped_omim_mondo.tsv): 123
+ * Number of mappings in [`unmapped_omim_mondo`](mondo-only/unmapped_omim_mondo.tsv): 118
+ * Number of mappings in [`unmapped_omim_mondo_exact`](mondo-only/unmapped_omim_mondo.tsv): 118
  * Number of mappings in [`unmapped_ordo_lex`](unmapped_ordo_lex.tsv): 1
  * Number of mappings in [`unmapped_ordo_lex_exact`](unmapped_ordo_lex.tsv): 1
  * Number of mappings in [`unmapped_ordo_mondo`](mondo-only/unmapped_ordo_mondo.tsv): 880
  * Number of mappings in [`unmapped_ordo_mondo_exact`](mondo-only/unmapped_ordo_mondo.tsv): 880
 ## mondo_XXXXmatch_ontology
- * Number of mappings in [`mondo_broadmatch_ncit`](split-mapping-set/mondo_broadmatch_ncit.tsv): 10
- * Number of mappings in [`mondo_exactmatch_ncit`](split-mapping-set/mondo_exactmatch_ncit.tsv): 145
- * Number of mappings in [`mondo_closematch_ncit`](split-mapping-set/mondo_closematch_ncit.tsv): 75
- * Number of mappings in [`mondo_exactmatch_omim`](split-mapping-set/mondo_exactmatch_omim.tsv): 117
- * Number of mappings in [`mondo_closematch_omim`](split-mapping-set/mondo_closematch_omim.tsv): 4
+ * Number of mappings in [`mondo_broadmatch_doid`](split-mapping-set/mondo_broadmatch_doid.tsv): 2
+ * Number of mappings in [`mondo_closematch_doid`](split-mapping-set/mondo_closematch_doid.tsv): 203
+ * Number of mappings in [`mondo_narrowmatch_doid`](split-mapping-set/mondo_narrowmatch_doid.tsv): 1
+ * Number of mappings in [`mondo_exactmatch_doid`](split-mapping-set/mondo_exactmatch_doid.tsv): 68
  * Number of mappings in [`mondo_broadmatch_icd10cm`](split-mapping-set/mondo_broadmatch_icd10cm.tsv): 69
+ * Number of mappings in [`mondo_closematch_icd10cm`](split-mapping-set/mondo_closematch_icd10cm.tsv): 5997
  * Number of mappings in [`mondo_narrowmatch_icd10cm`](split-mapping-set/mondo_narrowmatch_icd10cm.tsv): 58
  * Number of mappings in [`mondo_exactmatch_icd10cm`](split-mapping-set/mondo_exactmatch_icd10cm.tsv): 1957
- * Number of mappings in [`mondo_closematch_icd10cm`](split-mapping-set/mondo_closematch_icd10cm.tsv): 5997
- * Number of mappings in [`mondo_exactmatch_orphanet`](split-mapping-set/mondo_exactmatch_orphanet.tsv): 879
- * Number of mappings in [`mondo_closematch_orphanet`](split-mapping-set/mondo_closematch_orphanet.tsv): 3
+ * Number of mappings in [`mondo_broadmatch_ncit`](split-mapping-set/mondo_broadmatch_ncit.tsv): 10
+ * Number of mappings in [`mondo_closematch_ncit`](split-mapping-set/mondo_closematch_ncit.tsv): 75
+ * Number of mappings in [`mondo_exactmatch_ncit`](split-mapping-set/mondo_exactmatch_ncit.tsv): 145
  * Number of mappings in [`mondo_broadmatch_icd11.foundation`](split-mapping-set/mondo_broadmatch_icd11.foundation.tsv): 179
- * Number of mappings in [`mondo_exactmatch_icd11.foundation`](split-mapping-set/mondo_exactmatch_icd11.foundation.tsv): 8826
  * Number of mappings in [`mondo_closematch_icd11.foundation`](split-mapping-set/mondo_closematch_icd11.foundation.tsv): 3021
- * Number of mappings in [`mondo_broadmatch_doid`](split-mapping-set/mondo_broadmatch_doid.tsv): 2
- * Number of mappings in [`mondo_narrowmatch_doid`](split-mapping-set/mondo_narrowmatch_doid.tsv): 1
- * Number of mappings in [`mondo_exactmatch_doid`](split-mapping-set/mondo_exactmatch_doid.tsv): 65
- * Number of mappings in [`mondo_closematch_doid`](split-mapping-set/mondo_closematch_doid.tsv): 64
+ * Number of mappings in [`mondo_exactmatch_icd11.foundation`](split-mapping-set/mondo_exactmatch_icd11.foundation.tsv): 8826
+ * Number of mappings in [`mondo_closematch_omim`](split-mapping-set/mondo_closematch_omim.tsv): 4
+ * Number of mappings in [`mondo_exactmatch_omim`](split-mapping-set/mondo_exactmatch_omim.tsv): 113
+ * Number of mappings in [`mondo_exactmatch_omimps`](split-mapping-set/mondo_exactmatch_omimps.tsv): 7
+ * Number of mappings in [`mondo_closematch_orphanet`](split-mapping-set/mondo_closematch_orphanet.tsv): 3
+ * Number of mappings in [`mondo_exactmatch_orphanet`](split-mapping-set/mondo_exactmatch_orphanet.tsv): 879
  * Number of mappings in [`mondo_broadmatch_icd10who`](split-mapping-set/mondo_broadmatch_icd10who.tsv): 30
+ * Number of mappings in [`mondo_closematch_icd10who`](split-mapping-set/mondo_closematch_icd10who.tsv): 147
  * Number of mappings in [`mondo_narrowmatch_icd10who`](split-mapping-set/mondo_narrowmatch_icd10who.tsv): 25
  * Number of mappings in [`mondo_exactmatch_icd10who`](split-mapping-set/mondo_exactmatch_icd10who.tsv): 1224
- * Number of mappings in [`mondo_closematch_icd10who`](split-mapping-set/mondo_closematch_icd10who.tsv): 147
- * Number of mappings in [`mondo_exactmatch_omimps`](split-mapping-set/mondo_exactmatch_omimps.tsv): 8
diff --git a/src/ontology/lexmatch/all_exact.robot.tsv b/src/ontology/lexmatch/all_exact.robot.tsv
@@ -3905,17 +3905,17 @@ MONDO:0958303	MONDO:equivalentTo	NCIT:C189242	childhood renal cell carcinoma wit
 MONDO:0005641	MONDO:equivalentTo	DOID:2934	aleutian mink disease	aleutian mink disease	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	aleutian mink disease
 MONDO:0005676	MONDO:equivalentTo	DOID:5154	borna disease	borna disease	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	borna disease
 MONDO:0007744	MONDO:equivalentTo	DOID:0111368	cholesterol-ester transfer protein deficiency	cholesterol-ester transfer protein deficiency	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	cholesterol-ester transfer protein deficiency
-MONDO:0014563	MONDO:equivalentTo	DOID:0070540	mitochondrial short-chain Enoyl-Coa hydratase 1 deficiency	mitochondrial short-chain enoyl-CoA hydratase 1 deficiency	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	mitochondrial short-chain enoyl-coa hydratase 1 deficiency
-MONDO:0014654	MONDO:equivalentTo	DOID:0060948	Ullrich congenital muscular dystrophy 2	Ullrich congenital muscular dystrophy 2	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	ullrich congenital muscular dystrophy 2
-MONDO:0014936	MONDO:equivalentTo	DOID:0060953	ZTTK syndrome	ZTTK syndrome	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	zttk syndrome
-MONDO:0026763	MONDO:equivalentTo	DOID:0060954	holoprosencephaly 13, X-linked	Holoprosencephaly 13, X-linked	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	holoprosencephaly 13, x-linked
-MONDO:0030105	MONDO:equivalentTo	DOID:0060969	galactosemia 4	galactosemia 4	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	galactosemia 4
-MONDO:0030500	MONDO:equivalentTo	DOID:0060964	Loeys-Dietz syndrome 6	Loeys-Dietz syndrome 6	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	loeys-dietz syndrome 6
-MONDO:0030866	MONDO:equivalentTo	DOID:0070543	neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities	neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities
-MONDO:0031062	MONDO:equivalentTo	DOID:0060952	polycystic kidney disease 7	polycystic kidney disease 7	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	polycystic kidney disease 7
-MONDO:0100058	MONDO:equivalentTo	DOID:0060950	hypervalinemia and hyperleucine-isoleucinemia	hypervalinemia and hyperleucine-isoleucinemia	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	hypervalinemia and hyperleucine-isoleucinemia
-MONDO:0859341	MONDO:equivalentTo	DOID:0060968	hypotrichosis 15	hypotrichosis 15	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	hypotrichosis 15
-MONDO:0957921	MONDO:equivalentTo	DOID:0060970	Cornelia de Lange syndrome 6	Cornelia de Lange syndrome 6	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	cornelia de lange syndrome 6
+MONDO:0014563	MONDO:equivalentTo	DOID:0070540	mitochondrial short-chain Enoyl-Coa hydratase 1 deficiency	mitochondrial short-chain enoyl-CoA hydratase 1 deficiency	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:616277
+MONDO:0014654	MONDO:equivalentTo	DOID:0060948	Ullrich congenital muscular dystrophy 2	Ullrich congenital muscular dystrophy 2	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:616470
+MONDO:0014936	MONDO:equivalentTo	DOID:0060953	ZTTK syndrome	ZTTK syndrome	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:617140
+MONDO:0026763	MONDO:equivalentTo	DOID:0060954	holoprosencephaly 13, X-linked	Holoprosencephaly 13, X-linked	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:301043
+MONDO:0030105	MONDO:equivalentTo	DOID:0060969	galactosemia 4	galactosemia 4	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:618881
+MONDO:0030500	MONDO:equivalentTo	DOID:0060964	Loeys-Dietz syndrome 6	Loeys-Dietz syndrome 6	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:619656
+MONDO:0030866	MONDO:equivalentTo	DOID:0070543	neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities	neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:619121
+MONDO:0031062	MONDO:equivalentTo	DOID:0060952	polycystic kidney disease 7	polycystic kidney disease 7	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:620056
+MONDO:0100058	MONDO:equivalentTo	DOID:0060950	hypervalinemia and hyperleucine-isoleucinemia	hypervalinemia and hyperleucine-isoleucinemia	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:618850
+MONDO:0859341	MONDO:equivalentTo	DOID:0060968	hypotrichosis 15	hypotrichosis 15	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:620177
+MONDO:0957921	MONDO:equivalentTo	DOID:0060970	Cornelia de Lange syndrome 6	Cornelia de Lange syndrome 6	semapv:LexicalMatching	oaklib	0.9411764705882352	skos:exactMatch	skos:exactMatch	omim:620568
 MONDO:0000088	MONDO:equivalentTo	ICD10WHO:E30.1	precocious puberty	Precocious puberty	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	precocious puberty
 MONDO:0000245	MONDO:equivalentTo	ICD10WHO:B35.5	tinea imbricata	Tinea imbricata	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	tinea imbricata
 MONDO:0000367	MONDO:equivalentTo	ICD10WHO:B68	taeniasis	Taeniasis	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	taeniasis

diff --git a/src/ontology/lexmatch/mondo-only/unmapped_doid_mondo.tsv b/src/ontology/lexmatch/mondo-only/unmapped_doid_mondo.tsv
@@ -25,13 +25,11 @@ MONDO:0004398	mediastinal schwannoma	DOID:7922	MONDO:equivalentTo	obsolete benig
 MONDO:0005128	obsolete sensory system disease	DOID:0050155	MONDO:equivalentTo	sensory system disease	semapv:UnspecifiedMatching					
 MONDO:0005862	obsolete multiple chemical sensitivity	DOID:4661	MONDO:equivalentTo	multiple chemical sensitivity	semapv:UnspecifiedMatching					
 MONDO:0012144	Waardenburg syndrome type 2D	DOID:0110952	MONDO:equivalentTo	obsolete Waardenburg syndrome type 2D	semapv:UnspecifiedMatching					
-MONDO:0012233	obsolete Li-Fraumeni syndrome 2	DOID:0111504	MONDO:equivalentTo	Li-Fraumeni syndrome 2	semapv:UnspecifiedMatching					
 MONDO:0017841	obsolete autoimmune disease with skin involvement	DOID:0060039	MONDO:equivalentTo	autoimmune disease of skin and connective tissue	semapv:UnspecifiedMatching					
 MONDO:0018251	obsolete glycogen storage disease due to phosphorylase kinase deficiency	DOID:0050594	MONDO:equivalentTo	glycogen storage disease IX	semapv:UnspecifiedMatching					
 MONDO:0021199	obsolete disease by anatomical system	DOID:7	MONDO:equivalentTo	disease of anatomical entity	semapv:UnspecifiedMatching					
 MONDO:0021668	obsolete disorder involving pain	DOID:0060164	MONDO:equivalentTo	pain disorder	semapv:UnspecifiedMatching					
 MONDO:0024657	obsolete macrocystic neurilemmoma	DOID:3203	MONDO:equivalentTo	macrocystic neurilemmoma	semapv:UnspecifiedMatching					
-MONDO:0026768	obsolete warfarin sensitivity, X-linked	DOID:0080839	MONDO:equivalentTo	X-linked warfarin sensitivity	semapv:UnspecifiedMatching					
 MONDO:0100140	obsolete mild COVID-19 infection	DOID:0081014	MONDO:equivalentTo	non-severe COVID-19	semapv:UnspecifiedMatching					
 MONDO:0100142	obsolete severe COVID-19 infection	DOID:0081013	MONDO:equivalentTo	severe COVID-19	semapv:UnspecifiedMatching					
 MONDO:0100143	obsolete critical COVID-19 infection	DOID:0081012	MONDO:equivalentTo	critical COVID-19	semapv:UnspecifiedMatching