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monarch-initiative · Jul 6, 2024 · 974381f · 974381f
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/doid.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 27 |
-| Axioms | 116206 |
-| Logical axioms | 16161 |
-| Classes | 13124 |
+| Axioms | 116493 |
+| Logical axioms | 16200 |
+| Classes | 13147 |
 | Object properties | 0 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,11 +32,11 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 86894 |
+| AnnotationAssertion | 87119 |
 | SubAnnotationPropertyOf | 1 |
 | DisjointClasses | 26 |
-| Declaration | 13150 |
-| SubClassOf | 16135 |
+| Declaration | 13173 |
+| SubClassOf | 16174 |
 
 
 #### Entity namespaces: axiom counts by namespace
@@ -45,7 +45,7 @@
 | ------ | ----- |
 | oboInOwl | 12 |
 | owl | 2 |
-| DOID | 11577 |
+| DOID | 11600 |
 | HP | 118 |
 | xsd | 1 |
 | CL | 63 |
@@ -70,7 +70,7 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 45606 |
+| Class | 45707 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/gard.md b/docs/metrics/gard.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/gard.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/gard.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd11foundation.md b/docs/metrics/icd11foundation.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/icd11foundation.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd11foundation.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/omim.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 18 |
-| Axioms | 346174 |
-| Logical axioms | 22747 |
-| Classes | 19514 |
+| Axioms | 346314 |
+| Logical axioms | 22738 |
+| Classes | 19512 |
 | Object properties | 7 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,23 +32,23 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 303891 |
+| AnnotationAssertion | 304042 |
 | SubAnnotationPropertyOf | 1 |
-| Declaration | 19535 |
-| SubClassOf | 22747 |
+| Declaration | 19533 |
+| SubClassOf | 22738 |
 
 
 #### Entity namespaces: axiom counts by namespace
 
 | Metric | Value |
 | ------ | ----- |
-| prefix_unknown | 18068 |
+| prefix_unknown | 18069 |
 | oboInOwl | 4 |
 | owl | 2 |
 | xsd | 1 |
 | skos | 1 |
 | rdfs | 2 |
-| CHR | 1449 |
+| CHR | 1446 |
 | MONDO | 1 |
 | rdf | 1 |
 | IAO | 2 |
@@ -61,8 +61,8 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 64998 |
-| ObjectSomeValuesFrom | 17818 |
+| Class | 64978 |
+| ObjectSomeValuesFrom | 17808 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-06-22/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/ordo.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 16 |
-| Axioms | 206309 |
-| Logical axioms | 42481 |
-| Classes | 14917 |
+| Axioms | 213414 |
+| Logical axioms | 42867 |
+| Classes | 15089 |
 | Object properties | 4 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,18 +32,18 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 148893 |
+| AnnotationAssertion | 155440 |
 | SubAnnotationPropertyOf | 1 |
-| Declaration | 14934 |
-| SubClassOf | 42481 |
+| Declaration | 15106 |
+| SubClassOf | 42867 |
 
 
 #### Entity namespaces: axiom counts by namespace
 
 | Metric | Value |
 | ------ | ----- |
 | dc11 | 1 |
-| prefix_unknown | 14917 |
+| prefix_unknown | 15089 |
 | oboInOwl | 6 |
 | owl | 2 |
 | rdf | 1 |
@@ -60,8 +60,8 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 99879 |
-| ObjectSomeValuesFrom | 6737 |
+| Class | 100823 |
+| ObjectSomeValuesFrom | 6771 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -1,9 +1,9 @@
 # Mapped deprecated terms
 | Ontology                                                  |   Tot deprecated in Mondo |
 |:----------------------------------------------------------|--------------------------:|
-| [DOID](./mapped_deprecated_doid.md)                       |                         5 |
+| [DOID](./mapped_deprecated_doid.md)                       |                         6 |
 | [OMIM](./mapped_deprecated_omim.md)                       |                        46 |
-| [ORDO](./mapped_deprecated_ordo.md)                       |                       226 |
+| [ORDO](./mapped_deprecated_ordo.md)                       |                       260 |
 | [NCIT](./mapped_deprecated_ncit.md)                       |                        22 |
 | [GARD](./mapped_deprecated_gard.md)                       |                         0 |
 | [ICD11FOUNDATION](./mapped_deprecated_icd11foundation.md) |                         0 |

diff --git a/docs/reports/mapped_deprecated_doid.md b/docs/reports/mapped_deprecated_doid.md
@@ -6,6 +6,7 @@
 |:--------------|:---------------------|:-------------------------|
 | ID            | A oboInOwl:hasDbXref | >A oboInOwl:source       |
 | MONDO:0001639 | DOID:13121           | MONDO:equivalentObsolete |
+| MONDO:0006886 | DOID:3968            | MONDO:equivalentObsolete |
 | MONDO:0008024 | DOID:0111201         | MONDO:equivalentObsolete |
 | MONDO:0008025 | DOID:0111208         | MONDO:equivalentObsolete |
 | MONDO:0013127 | DOID:0050549         | MONDO:equivalentObsolete |