- Bugfix: omim.sssom.tsv was not able to be built due to missing onto…

…logy declaration

.github/workflows/buid_and_release.yml

@@ -28,8 +28,7 @@ jobs:
     - name: build
       # TODO: change to make all when fixed: https://github.com/monarch-initiative/omim/issues/92
       run: |
-        make automated-release-artefacts
-#        make all
+        make all
 
 
     - name: Release
@@ -43,4 +42,4 @@ jobs:
         # TODO: include omim.sssom.tsv when fixed: https://github.com/monarch-initiative/omim/issues/92
         files: |
           omim.ttl
-#          omim.sssom.tsv
+          omim.sssom.tsv

makefile

@@ -1,9 +1,8 @@
-.PHONY: all help install test scrape get-pmids automated-release-artefacts cleanup
+.PHONY: all help install test scrape get-pmids cleanup
 
 
 # MAIN COMMANDS / GOALS ------------------------------------------------------------------------------------------------
 all: omim.ttl omim.sssom.tsv
-automated-release-artefacts: omim.ttl
 
 # build: Create new omim.ttl
 omim.ttl:

omim2obo/main.py

@@ -137,6 +137,7 @@ def omim2obo(use_cache: bool = False):
 
     # Populate graph
     # - Non-OMIM triples
+    graph.add((URIRef('http://purl.obolibrary.org/obo/mondo/omim.owl'), RDF.type, OWL.Ontology))
     graph.add((URIRef('http://www.geneontology.org/formats/oboInOwl#hasSynonymType'), RDF.type, OWL.AnnotationProperty))
     graph.add((BIOLINK['has_evidence'], RDF.type, OWL.AnnotationProperty))
     graph.add((TAX_URI, RDF.type, OWL.Class))