Skip to content

Commit

Permalink
Merge pull request #182 from monarch-initiative/d2g-release
Browse files Browse the repository at this point in the history
Add `disease-gene-relationships-qc.tsv` to releases
  • Loading branch information
joeflack4 authored Dec 19, 2024
2 parents e8717a1 + e3645e5 commit d15adcc
Show file tree
Hide file tree
Showing 2 changed files with 5 additions and 4 deletions.
3 changes: 2 additions & 1 deletion .github/workflows/buid_and_release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,8 @@ jobs:
title: "${{ steps.current-time.outputs.formattedTime }}"
prerelease: false
files: |
disease-gene-relationships-qc.tsv
mondo-omim-genes.robot.tsv
omim.owl
omim.sssom.tsv
mondo-omim-genes.robot.tsv
review.tsv
6 changes: 3 additions & 3 deletions makefile
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@


# MAIN COMMANDS / GOALS ------------------------------------------------------------------------------------------------
all: omim.ttl omim.sssom.tsv omim.owl mondo-omim-genes.robot.tsv
all: omim.ttl omim.sssom.tsv omim.owl mondo-omim-genes.robot.tsv disease-gene-relationships-qc.tsv

# build: Create new omim.ttl
omim.ttl:
Expand Down Expand Up @@ -43,8 +43,8 @@ mondo-omim-genes.tsv: omim.owl
mondo-omim-genes.robot.tsv: mondo-omim-genes.tsv
python -m omim2obo.mondo_omim_genes_robot_tsv --inpath $< --outpath $@

# Ad hoc: Create a TSV of MIM-RO-MIM Gene-to-Disease realtions in omim.ttl
disease-gene-relationships.tsv: omim.ttl
# Create a QC file of MIM-RO-MIM Gene-to-Disease associations in omim.ttl
disease-gene-relationships-qc.tsv: omim.ttl
robot query -i $< --query sparql/disease-gene-relationships.sparql $@

cleanup:
Expand Down

0 comments on commit d15adcc

Please sign in to comment.