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update grasp.sh script
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uecker committed Oct 7, 2015
1 parent cf4e77b commit cb28538
Showing 1 changed file with 6 additions and 3 deletions.
9 changes: 6 additions & 3 deletions scripts/grasp.sh
100644 → 100755
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ MAXPROC=4
MAXTHREADS=4

title=$(cat <<- EOF
(BART-)GRASP v0.2 (Berkeley Advanced Reconstruction Toolbox)
(BART-)GRASP v0.3 (Berkeley Advanced Reconstruction Toolbox)
--- EXPERIMENTAL --- FOR RESEARCH USE ONLY ---
EOF
)
Expand All @@ -34,7 +34,7 @@ Compressed sensing parallel imaging reconstruction with temporal
total-variation regularization for Siemens radial VIBE sequence
with golden-angle sampling (GRASP).
This script requires the Berkeley Advanced Reconstruction Toolbox
version 0.2.08. Later versions may work.
version 0.2.09. (later versions may also work).
-s spokes number of spokes per frame
-r lambda regularization parameter
Expand Down Expand Up @@ -183,7 +183,10 @@ recon_slice()
rm grasp2-$1.cfl grasp2-$1.hdr

# reconstruction with tv penality along dimension 10
pics -S -d5 -lv -u10. -r$REG -R$(bitmask 10) -i$ITER -t rfull grasp1-$1 sens-$1 i-$1.coo
# old (v0.2.08):
# pics -S -d5 -lv -u10. -r$REG -R$(bitmask 10) -i$ITER -t rfull grasp1-$1 sens-$1 i-$1.coo
# new (v0.2.09):
pics -S -d5 -u10. -RT:$(bitmask 10):0:$REG -i$ITER -t rfull grasp1-$1 sens-$1 i-$1.coo

# clean up temp files
rm *-$1.cfl *-$1.hdr
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