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Determine if complexvar VCF needs to be normalized/sorted or not #12

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Tracked by #17
rnaidu opened this issue Sep 30, 2024 · 0 comments
Open
Tracked by #17

Determine if complexvar VCF needs to be normalized/sorted or not #12

rnaidu opened this issue Sep 30, 2024 · 0 comments
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rnaidu commented Sep 30, 2024

Description of the bug

Compare the pre and post normalization + sorting of the complex variants VCF file produced by VarDict to see if it is necessary for the complexvar VCF to be normalized/sorted, or just the standard VCF

Command used and terminal output

bcftools norm and bcftools sort

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@rnaidu rnaidu added the bug Something isn't working label Sep 30, 2024
@rnaidu rnaidu self-assigned this Sep 30, 2024
@rnaidu rnaidu mentioned this issue Oct 8, 2024
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