Enhancements for nucleovar v2 #17
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…orkflows/modules not being used, added vardict_header_file as CLI input and changed configs accordingly, added correct version of perlVCF2MAF module
…ar.nf and added outputs of nucleovar to be emitted. Also added a publishDir statement in last moddule but commented out for now
…ariable to set their path as a channel in nucleovar
…ics-workflows/nucleovar into feature/enhancements_v2 avoiding merge conflict
This was referenced Oct 10, 2024
…ics-workflows/nucleovar into feature/enhancements_v2 avoiding merge conflicts
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PR checklist
Here are the issues that this PR closes:
~/tests/resources/#15 (comment)nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).