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Re-organizing nucleovar.nf to make sure each Variant Caller (VarDict,MuTect,MuTect2) is called in a separate subworkflow. This is in order to compartmentalize the code and keep nucleovar.nf concise.
Steps in each variant caller subworkflow:
Variant Caller module
Variant Caller Filtering
BCFTools Suite (gzip,norm,sort,concat)
Final output of each subworkflow is a concatenated VCF file that will be annotated against each variant caller.
The text was updated successfully, but these errors were encountered:
Description of feature
Re-organizing nucleovar.nf to make sure each Variant Caller (VarDict,MuTect,MuTect2) is called in a separate subworkflow. This is in order to compartmentalize the code and keep nucleovar.nf concise.
Steps in each variant caller subworkflow:
Final output of each subworkflow is a concatenated VCF file that will be annotated against each variant caller.
The text was updated successfully, but these errors were encountered: