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Implement DeepSomatic as Variant Caller #18

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Implement DeepSomatic as Variant Caller #18

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@rnaidu rnaidu commented Oct 10, 2024 •
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PR checklist

  • Implementation of DeepSomatic as Variant Caller: Implement DeepSomatic #8 (comment)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@rnaidu rnaidu self-assigned this Oct 10, 2024
@rnaidu rnaidu changed the title test push for PR Implement DeepSomatic as Variant Caller Oct 10, 2024
@rnaidu rnaidu changed the base branch from dev to feature/enhancements_v2 October 10, 2024 19:57
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