Release/0.1.0 #19
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Release/0.1.0 #19
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…ut changing original module.
…added parameter validation/checking statements in WorkflowNucleovar.groovy
…s-workflows/nucleovar into feature/call_variants keeping branches up to date between cluster and local
…single sample mode.
…ect1 module (commented out until mutect1 PR has been reviewed)
… variant calling docker image) and added to call_variants.nf subworkflows with necessary args
…BAM files from ArrayList to List type in vardictjava module
…ccessfully working in single and paired sample mode
… calling and added conditional statement in nucleovar.nf to trigger pipeline depending on number of samples as input. Also cleanup of random test data and directories
…ics-workflows/nucleovar into feature/enhancements_v2 avoiding merge conflicts
… scope of bcftools reheader module to avoid sample switchup when running on diff nodes. also updated test config with correct filepath for header file
This reverts commit 31c7447.
…s_v2 Enhancements for nucleovar v2
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PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).There is a conflict with the required nextflow version and nf-prov pinned version. Ignoring this error for now.