Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Need 'assay' included in Run output_metadata #121

Closed
stevekm opened this issue Jan 31, 2020 · 2 comments
Closed

Need 'assay' included in Run output_metadata #121

stevekm opened this issue Jan 31, 2020 · 2 comments

Comments

@stevekm
Copy link
Member

stevekm commented Jan 31, 2020

In order to make the assay type accessible to downstream piplelines, the "assay" metadata value from Roslin operator should be included in the Run.output_metadata. This will allow it to be used as the input for the Roslin QC pipeline, where it is needed to determine which database files to use for references
@stevekm
Copy link
Member Author

stevekm commented Feb 11, 2020

working on that here: #135

@stevekm stevekm mentioned this issue Feb 19, 2020
Closed
@allanbolipata
Copy link
Collaborator

We added this to the roslin-cwl pair workflow output so this shouldn't be needed for now.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@stevekm @allanbolipata