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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 369 215

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 137 65

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 59 30

Repositories

Showing 10 of 224 repositories
  • argos_report Public

    Repository for ARGOS report (v1.0.1 Balto)

    mskcc/argos_report’s past year of commit activity
    CSS 0 0 0 0 Updated Sep 19, 2024
  • smile-request-filter Public

    CMO MetaDB Request Filter app

    mskcc/smile-request-filter’s past year of commit activity
    Java 0 AGPL-3.0 4 0 0 Updated Sep 19, 2024
  • smile-messaging-java Public

    CMO Messaging Library

    mskcc/smile-messaging-java’s past year of commit activity
    Java 0 AGPL-3.0 3 0 0 Updated Sep 19, 2024
  • smile-commons Public

    Centralized configurations for checkstyle plugin and dependency management.

    mskcc/smile-commons’s past year of commit activity
    Java 1 AGPL-3.0 4 0 1 Updated Sep 19, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Sep 19, 2024
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Sep 19, 2024
  • DeepSig Public

    Single-Base Substitution Mutational Signature Inference for WES and MSK-IMPACT

    mskcc/DeepSig’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Sep 18, 2024
  • Penguin Public

    ecDNA detection pipeline for MSK Sequencing Data

    mskcc/Penguin’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 18, 2024
  • smile-dashboard Public
    mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 8 0 3 Updated Sep 18, 2024
  • forte Public

    Functional Observation of RNA Transcriptome Elements/Expression

    mskcc/forte’s past year of commit activity
    Nextflow 7 MIT 0 18 2 Updated Sep 18, 2024
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