Using micromamba

.github/workflows/build_and_test.yml

@@ -1,4 +1,4 @@
-name: Build and test
+name: Lint and test
 
 on: [push, pull_request]
 
@@ -8,7 +8,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python-version: ["3.10"] #, "3.9", "3.10"]
+         python-version: ["3.10"] #, "3.9", "3.10"]
 
     # Skip `pull_request` runs on local PRs for which `push` runs are already triggered
     if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
@@ -35,20 +35,23 @@ jobs:
       uses: actions/setup-python@v3
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Add conda to system path
-      run: |
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
-    - name: Install ldap dependencies
+
+    - name: Install LDAP dependencies
       run: sudo apt-get -y install libsasl2-dev libldap2-dev libssl-dev
-    - name: Install dependencies
-      run: |
-        conda install -c conda-forge mamba
-        mamba env update --file conda-environment.yml --name base
-        python -m poetry install --with dev
+
+    - name: Set up Conda environment
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        micromamba-version: "latest"
+        environment-file: conda-environment.yml
+        cache-environment: true
+        post-cleanup: "all"
+
+    - name: Install MXCuBE
+      run: "${MAMBA_EXE} run --name mxcubeweb poetry install"
+
     - name: Linting & Code Quality
-      run: |
-        poetry run pre-commit run --all-files
+      run: "${MAMBA_EXE} run --name mxcubeweb poetry run pre-commit run --all-files"
+
     - name: Test with pytest
-      run: |
-        poetry run pytest
+      run: "${MAMBA_EXE} run --name mxcubeweb poetry run pytest"

conda-environment.yml

@@ -5,7 +5,6 @@ dependencies:
   - python >=3.8,<3.11
   - openldap
   - python-ldap=3.4.0
-  - pip
   - poetry
   - nodejs
   - redis-server

pyproject.toml

@@ -47,7 +47,6 @@ bcrypt = "^4.0.1"
 
 [tool.poetry.dev-dependencies]
 myst-parser = "^2.0.0"
-pylint = [ { version = "==2.13.9", python = "<=3.7.1" }, { version = "2.15.3", python = ">=3.8" } ]
 pre-commit = "2.20.0"
 pytest = "7.1.3"
 pytest-cov = "4.0.0"