using biocontainers and removing custom container version (#85)

mycobactopia-org · Apr 24, 2024 · e7038ee · e7038ee
1 parent 281216f
commit e7038ee
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diff --git a/conf/modules.config b/conf/modules.config
@@ -40,7 +40,7 @@ process {
     }
 
     withName: '.*TB.*' {
-        container = 'ghcr.io/mycobactopia-org/mtbseq-nf:0.9.7'
+        container = 'quay.io/biocontainers/mtbseq:1.1.0--hdfd78af_0'
 
     }
 

diff --git a/container/Dockerfile b/container/Dockerfile
diff --git a/container/build_and_publish.sh b/container/build_and_publish.sh
-Original file line number
+Diff line change
@@ Expand Up / @@ -40,7 +40,7 @@ process { @@
         }
         withName: '.*TB.*' {
-            container = 'ghcr.io/mycobactopia-org/mtbseq-nf:0.9.7'
+            container = 'quay.io/biocontainers/mtbseq:1.1.0--hdfd78af_0'
         }
@@ Expand Down @@