v0.3.2

Fixed

• Remove extra character in hg19 metadata file

Added

• System tests of hg002 real variation with hg19 reference

v0.3.1

Changed

• This is a housekeeping release to update the ont-spectre conda package requirements.

v0.3.0

Added

• Karyotype detection for XXX and XYY
• Output karyotype to .vcf file
• Numpy >= 2 support
• Ont-spectre description to README
• Blacklists v1 and metadata for hg19/hg38/chm13 in package resources

Fixed

• Installation from source instructions
• threshold_quantile parameter name typo

v0.2.2

Removed

• Plotting charts per every chromosome

v0.2.1

Added

• System tests based on single chromosome subsample

Changed

• Match default parameters with wf-human-variation
• Copy CN from INFO field to sample column in vcf output
• Metadata and blacklist can be parsed from package resources
• Metadata and blacklist duplicated with omitting "chr" from chromosome names

Fixed

• Missing dependencies
• Parsing mosdepth with number/string chromosome names

v0.2.0

Changed

• Forked from upstread spectre project.
• Reworked package to be packaged.