-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
8bc173f
commit 528bdc5
Showing
28 changed files
with
23,671 additions
and
355 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,32 @@ | ||
| >0 | ||
| ATCTTAGAGTTGGCTTCGAGCTTAGATGCTTTCAGCTCTTATCACATCCCAACGTGGCTA | ||
| >1 | ||
| CTGTCTCTTATACACATCTCCGAGCCCACGAGAC | ||
| >2 | ||
| TGACTGGAGTTCAGACGTGTGCTCTTCCGATCT | ||
| >3 | ||
| unspecified | ||
| >4 | ||
| ACACTCTTTCCCTACACGACGCTCTTCCGATCT | ||
| >5 | ||
| heifigepsna | ||
| >6 | ||
| CTGTCTCTTATACACATCTGACGCTGCCGACGA | ||
| >7 | ||
| TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG | ||
| >8 | ||
| GAACTTCAGGGAAAGTTCATCTTAGAGTTGGCTTCGAGCTTAGATGCTTTCAGCTCTTAT | ||
| >9 | ||
| GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG | ||
| >10 | ||
| AGATCGGAAGAGCACACGTCTGAACTCCAGTCA | ||
| >11 | ||
| TAGCCACGTTGGGATGTGATAAGAGCTGAAAGCATCTAAGCTCGAAGCCAACTCTAAGAT | ||
| >12 | ||
| GTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGACGAAAGTCTGATG | ||
| >13 | ||
| ATAAGAGCTGAAAGCATCTAAGCTCGAAGCCAACTCTAAGATGAACTTTCCCTGAAGTTC | ||
| >14 | ||
| CATCAGACTTTCGTCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGAC | ||
| >15 | ||
| AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,69 @@ | ||
| name taxonomy_id taxonomy_lvl kraken_assigned_reads added_reads new_est_reads fraction_total_reads sample | ||
| Viruses 10239 D 26975 2 26977 0.81677 5_28_I | ||
| Bacteria 2 D 5960 47 6007 0.18187 5_28_I | ||
| Eukaryota 2759 D 42 0 42 0.00127 5_28_I | ||
| Archaea 2157 D 2 0 2 6e-5 5_28_I | ||
| Viruses 10239 D 1428 0 1428 0.74414 5_13_A_S1 | ||
| Bacteria 2 D 464 26 490 0.25534 5_13_A_S1 | ||
| Viruses 10239 D 1086 0 1086 0.76318 5_13_C_S2 | ||
| Bacteria 2 D 306 27 333 0.23401 5_13_C_S2 | ||
| Eukaryota 2759 D 3 0 3 0.00211 5_13_C_S2 | ||
| Bacteria 2 D 314969 648 315617 0.96657 S_3_6_30_MOS | ||
| Eukaryota 2759 D 333 0 333 0.00102 S_3_6_30_MOS | ||
| Archaea 2157 D 32 0 32 1e-4 S_3_6_30_MOS | ||
| Viruses 10239 D 10546 2 10548 0.0323 S_3_6_30_MOS | ||
| Viruses 10239 D 11111 1 11112 0.81169 5_19_A_S4 | ||
| Bacteria 2 D 2513 19 2532 0.18495 5_19_A_S4 | ||
| Eukaryota 2759 D 41 0 41 0.00299 5_19_A_S4 | ||
| Archaea 2157 D 4 0 4 2.9e-4 5_19_A_S4 | ||
| Viruses 10239 D 25125 1 25126 0.97969 5_19_F_S3 | ||
| Bacteria 2 D 492 22 514 0.02004 5_19_F_S3 | ||
| Eukaryota 2759 D 6 0 6 2.3e-4 5_19_F_S3 | ||
| Viruses 10239 D 20174 2 20176 0.8001 5_28_E | ||
| Bacteria 2 D 4922 37 4959 0.19665 5_28_E | ||
| Eukaryota 2759 D 69 1 70 0.00278 5_28_E | ||
| Archaea 2157 D 11 0 11 4.4e-4 5_28_E | ||
| Viruses 10239 D 34178 1 34179 0.90967 6_09_N1 | ||
| Bacteria 2 D 3307 33 3340 0.08889 6_09_N1 | ||
| Eukaryota 2759 D 43 0 43 0.00114 6_09_N1 | ||
| Archaea 2157 D 9 0 9 2.4e-4 6_09_N1 | ||
| Bacteria 2 D 67404 123 67527 0.76001 MR_1_7_1_MOS | ||
| Eukaryota 2759 D 425 2 427 0.00481 MR_1_7_1_MOS | ||
| Archaea 2157 D 10 0 10 1.1e-4 MR_1_7_1_MOS | ||
| Viruses 10239 D 20884 0 20884 0.23505 MR_1_7_1_MOS | ||
| Viruses 10239 D 29046 0 29046 0.90999 6_09_S1 | ||
| Bacteria 2 D 2821 25 2846 0.08916 6_09_S1 | ||
| Eukaryota 2759 D 18 0 18 5.6e-4 6_09_S1 | ||
| Archaea 2157 D 8 0 8 2.5e-4 6_09_S1 | ||
| Bacteria 2 D 105323 229 105552 0.88756 S_3_6_30_COL | ||
| Eukaryota 2759 D 316 1 317 0.00267 S_3_6_30_COL | ||
| Archaea 2157 D 21 0 21 1.8e-4 S_3_6_30_COL | ||
| Viruses 10239 D 13033 0 13033 0.10959 S_3_6_30_COL | ||
| Bacteria 2 D 6132722 5372 6138094 0.98571 MR2 | ||
| Eukaryota 2759 D 5633 18 5651 9.1e-4 MR2 | ||
| Archaea 2157 D 2134 1 2135 3.4e-4 MR2 | ||
| Viruses 10239 D 81185 31 81216 0.01304 MR2 | ||
| Bacteria 2 D 11148252 8052 11156304 0.99179 S68-1 | ||
| Eukaryota 2759 D 4337 13 4350 3.9e-4 S68-1 | ||
| Archaea 2157 D 2639 0 2639 2.3e-4 S68-1 | ||
| Viruses 10239 D 85305 38 85343 0.00759 S68-1 | ||
| Bacteria 2 D 2888243 4800 2893043 0.94028 630-S1 | ||
| Eukaryota 2759 D 9444 48 9492 0.00309 630-S1 | ||
| Archaea 2157 D 1849 1 1850 6e-4 630-S1 | ||
| Viruses 10239 D 172142 266 172408 0.05603 630-S1 | ||
| Bacteria 2 D 6847940 6575 6854515 0.98591 MR3 | ||
| Eukaryota 2759 D 5778 18 5796 8.3e-4 MR3 | ||
| Archaea 2157 D 2578 1 2579 3.7e-4 MR3 | ||
| Viruses 10239 D 89512 49 89561 0.01288 MR3 | ||
| Bacteria 2 D 12231694 7421 12239115 0.99227 630-S2 | ||
| Archaea 2157 D 4218 1 4219 3.4e-4 630-S2 | ||
| Eukaryota 2759 D 4168 11 4179 3.4e-4 630-S2 | ||
| Viruses 10239 D 86851 85 86936 0.00705 630-S2 | ||
| Bacteria 2 D 9566944 7982 9574926 0.98268 630-SF1 | ||
| Eukaryota 2759 D 9234 38 9272 9.5e-4 630-SF1 | ||
| Archaea 2157 D 5527 2 5529 5.7e-4 630-SF1 | ||
| Viruses 10239 D 153842 69 153911 0.0158 630-SF1 | ||
| Bacteria 2 D 6251658 8648 6260306 0.97092 630-N | ||
| Eukaryota 2759 D 3314 15 3329 5.2e-4 630-N | ||
| Archaea 2157 D 1978 1 1979 3.1e-4 630-N | ||
| Viruses 10239 D 181855 357 182212 0.02826 630-N |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| library sample location collection_date method enrichment | ||
| SRR12596165 6_09_N1 Berkeley 2020-06-09 amicon enriched | ||
| SRR12596166 5_28_E Berkeley 2020-05-28 amicon enriched | ||
| SRR12596167 5_13_C_S2 Oakland 2020-05-13 amicon enriched | ||
| SRR12596168 6_09_S1 Oakland 2020-06-09 amicon enriched | ||
| SRR12596169 5_28_I Oakland 2020-05-28 amicon enriched | ||
| SRR12596170 5_19_A_S4 Oakland 2020-05-19 amicon enriched | ||
| SRR12596171 S_3_6_30_COL Oakland 2020-06-30 COL enriched | ||
| SRR12596172 5_19_F_S3 Oakland 2020-05-19 amicon enriched | ||
| SRR12596173 5_13_A_S1 Oakland 2020-05-13 amicon enriched | ||
| SRR12596174 S_3_6_30_MOS Oakland 2020-06-30 MOS enriched | ||
| SRR12596175 MR_1_7_1_MOS Marin 2020-07-01 MOS enriched | ||
| SRR23998353 S68-1 Oakland 2020-06-30 COL unenriched | ||
| SRR23998354 MR3 Marin 2020-07-01 MOS unenriched | ||
| SRR23998355 MR2 Marin 2020-07-01 MOS unenriched | ||
| SRR23998356 630-SF1 SF 2020-06-30 MOS unenriched | ||
| SRR23998357 630-S2 Oakland 2020-06-30 COL unenriched | ||
| SRR23998358 630-S1 Oakland 2020-06-30 COL unenriched | ||
| SRR23998359 630-N Berkeley 2020-06-30 COL unenriched |
Oops, something went wrong.