Fix numpy doctest #1019
Workflow file for this run
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| name: Tests | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| # igraph: ["igraph", "no-igraph"] | |
| steps: | |
| # This cancels any such job that is still runnning | |
| - name: Cancel Previous Runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Blender | |
| run: | | |
| pwd | |
| wget -qO- https://mirrors.iu13.net/blender/release/Blender4.2/blender-4.2.4-linux-x64.tar.xz | tar xJ | |
| mv blender-4.2.4-linux-x64 ../ | |
| echo "PATH=../blender-4.2.4-linux-x64/:$PATH" >> $GITHUB_ENV | |
| - name: Install Linux libraries | |
| run: | | |
| sudo apt-get update -y -qq | |
| sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
| libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
| libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev \ | |
| mesa-vulkan-drivers | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install zstandard==0.16.0 | |
| pip install numpy | |
| pip install flybrains --no-deps | |
| pip install git+https://github.com/siavashk/pycpd@master | |
| pip install pyarrow | |
| - name: Install navis | |
| run: pip install -e .[dev,all] | |
| # - run: pip install python-igraph | |
| # if: ${{ matrix.igraph == 'igraph' }} | |
| - name: Report dependency versions | |
| run: | | |
| which blender | |
| pip freeze -r requirements.txt | |
| - name: Test | |
| uses: coactions/setup-xvfb@v1 | |
| with: | |
| run: | | |
| export NAVIS_HEADLESS=TRUE | |
| export NAVIS_TEST_ENV=TRUE | |
| pytest --verbose |