bump setuptools minimum version because of known security vulnerability #573
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name: Notebooks | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
# This cancels any such job that is still running | |
- name: Cancel Previous Runs | |
uses: styfle/[email protected] | |
with: | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v2 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.8 | |
- name: Install graphviz | |
run: | | |
sudo apt-get install -y graphviz graphviz-dev | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d | |
python -m pip install -e .[test-notebook] | |
- name: Run notebooks | |
env: | |
NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }} | |
INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }} | |
INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }} | |
run: | | |
python tests/test_notebooks.py |