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navis-org · Sep 22, 2024 · 2c3592f · 2c3592f
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diff --git a/.nojekyll b/.nojekyll
diff --git a/404.html b/404.html
diff --git a/_static/NBLAST_neuron_comparison.png b/_static/NBLAST_neuron_comparison.png
diff --git a/_static/NBLAST_score_mat.png b/_static/NBLAST_score_mat.png
diff --git a/_static/NBLAST_score_mat_inv.png b/_static/NBLAST_score_mat_inv.png
diff --git a/_static/_old_style.css b/_static/_old_style.css
@@ -0,0 +1,151 @@
+/* This style sheet is from the excellent seaborn library: */
+/* https://seaborn.pydata.org (https://github.com/mwaskom/seaborn) */
+
+body { color: #444444 !important; }
+
+h1 { font-size: 40px !important; }
+h2 { font-size: 32px !important; }
+h3 { font-size: 24px !important; }
+h4 { font-size: 18px !important; }
+h5 { font-size: 14px !important; }
+h6 { font-size: 10px !important; }
+
+footer a{
+
+    color: #4c72b0 !important;
+}
+a.reference {
+    color: #4c72b0 !important;
+}
+
+blockquote p {
+    font-size: 14px !important;
+}
+
+blockquote {
+    padding-top: 4px !important;
+    padding-bottom: 4px !important;
+    margin: 0 0 0px !important;
+}
+
+pre {
+    background-color: #f6f6f9 !important;
+    width: 90% !important;
+    padding-top: 4px !important;
+    padding-bottom: 4px !important;
+}
+
+code {
+    color: #49759c !important;
+    background-color: #ffffff !important;
+}
+
+code.descclassname {
+    padding-right: 0px !important;
+}
+
+code.descname {
+    padding-left: 0px !important;
+}
+
+dt:target, span.highlighted {
+    background-color: #ffffff !important;
+}
+
+ul {
+    padding-left: 20px !important;
+}
+
+ul.dropdown-menu {
+    padding-left: 0px !important;
+}
+
+.alert-info {
+    background-color: #adb8cb !important;
+    border-color: #adb8cb !important;
+    color: #2c3e50 !important;
+}
+
+.topic {
+    background-color: #e8e8e8 !important;
+    border-color: #e8e8e8 !important;
+    color: #444444 !important;
+    border-radius: 5px !important;
+}
+
+.panel-title{
+    background-color: #adb8cb !important;
+}
+
+.panel-heading{
+    background-color: #adb8cb !important;
+}
+
+.alert-danger {
+    color: #444444;
+    background-color: #ce9f9f !important;
+    border-color: #ce9f9f !important;
+    }
+
+.alert-trim {
+    display: block !important;
+    /*width: 50%; */
+}
+
+.red {
+    color: #C0392B !important;
+    font-weight: bold !important;
+}
+
+/* From https://github.com/twbs/bootstrap/issues/1768 */
+*[id]:before {
+  display: block;
+  content: " ";
+  margin-top: -75px;
+  height: 75px;
+  visibility: hidden;
+}
+
+table {
+    /*Uncomment to center tables horizontally*/
+    /* margin-left: auto; */
+    /* margin-right: auto; */
+    border: none;
+    border-collapse: collapse;
+    border-spacing: 0;
+    font-size: 12px;
+    /*table-layout: fixed;*/
+}
+
+thead {
+    border-bottom: 1px solid;
+    vertical-align: bottom;
+}
+
+tr, th, td {
+    text-align: left;
+    vertical-align: middle;
+    padding: 0.5em 0.5em;
+    line-height: normal;
+    white-space: normal;
+    max-width: none;
+    border: none;
+}
+
+th {
+    font-weight: bold;
+}
+
+tbody tr:nth-child(odd) {
+    background: #f5f5f5;
+}
+
+tbody tr:hover {
+    background: rgba(66, 165, 245, 0.2);
+}
+
+/* This prevents default style limit max width*/
+div.body {
+    min-width: 450px;
+    max-width: 1200px !important;
+}
diff --git a/_static/b3d_screenshot.jpg b/_static/b3d_screenshot.jpg
diff --git a/_static/barcode.afdesign b/_static/barcode.afdesign
diff --git a/_static/barcode.png b/_static/barcode.png
diff --git a/_static/blender_console.png b/_static/blender_console.png
diff --git a/_static/blender_logo.png b/_static/blender_logo.png
diff --git a/_static/blender_pip.png b/_static/blender_pip.png
diff --git a/_static/dotprops.png b/_static/dotprops.png
diff --git a/_static/favicon.ico b/_static/favicon.ico
diff --git a/_static/favicon.png b/_static/favicon.png
diff --git a/_static/favicon_dark.png b/_static/favicon_dark.png
diff --git a/_static/k3d_viewer.png b/_static/k3d_viewer.png
diff --git a/_static/logo_new.png b/_static/logo_new.png
diff --git a/_static/logo_new_banner.png b/_static/logo_new_banner.png
diff --git a/_static/mesh.png b/_static/mesh.png
diff --git a/_static/navis_ecosystem.png b/_static/navis_ecosystem.png
diff --git a/_static/navis_ecosystem_dark.png b/_static/navis_ecosystem_dark.png
diff --git a/_static/neuprint_logo.png b/_static/neuprint_logo.png
diff --git a/_static/octarine_viewer.png b/_static/octarine_viewer.png
diff --git a/_static/pickle.png b/_static/pickle.png
diff --git a/_static/plotly_orbital.png b/_static/plotly_orbital.png
diff --git a/_static/rotation.gif b/_static/rotation.gif
diff --git a/_static/skeleton.png b/_static/skeleton.png
diff --git a/_static/style.css b/_static/style.css
@@ -0,0 +1,90 @@
+/* From https://github.com/twbs/bootstrap/issues/1768 */
+*[id]:before {
+  display: block;
+  content: " ";
+  margin-top: -75px;
+  height: 75px;
+  visibility: hidden;
+}
+
+table {
+    /*Uncomment to center tables horizontally*/
+    /* margin-left: auto; */
+    /* margin-right: auto; */
+    border: none;
+    border-collapse: collapse;
+    border-spacing: 0;
+    font-size: 14px;
+    /*table-layout: fixed;*/
+}
+
+thead {
+    border-bottom: 1px solid;
+    vertical-align: bottom;
+}
+
+tr, th, td {
+    text-align: left;
+    vertical-align: middle;
+    padding: 0.5em 0.5em;
+    line-height: normal;
+    white-space: normal;
+    max-width: none;
+    border: none;
+}
+
+th {
+    font-weight: bold;
+}
+
+tbody tr:nth-child(odd) {
+    background: rgb(50, 50, 50);
+}
+
+tbody tr:hover {
+    background: rgba(66, 165, 245, 0.2);
+}
+
+/* This prevents default style limit max width*/
+div.body {
+    min-width: 450px;
+    max-width: 1200px !important;
+}
+
+ul {
+    padding-left: 20px !important;
+}
+
+ul.dropdown-menu {
+    padding-left: 0px !important;
+}
+
+blockquote p {
+    font-size: 14px !important;
+}
+
+blockquote {
+    padding-top: 4px !important;
+    padding-bottom: 4px !important;
+    margin: 0 0 0px !important;
+}
+
+pre {
+    background-color: rgb(180, 180, 180) !important;
+    width: 90% !important;
+    padding-top: 4px !important;
+    padding-bottom: 4px !important;
+}
+
+dt:target, span.highlighted {
+    background-color: rgb(100, 100, 100);
+}
+
+code {
+    background-color: rgb(200, 200, 200) !important;
+}
+
+:root {
+  --sd-color-card-header: rgb(70, 70, 70);
+  --sd-color-card-background: rgb(40, 40, 40);
+}
diff --git a/_static/vispy_viewer.png b/_static/vispy_viewer.png
diff --git a/_static/voxel.png b/_static/voxel.png
diff --git a/api/index.html b/api/index.html
diff --git a/assets/_markdown_exec_pyodide.css b/assets/_markdown_exec_pyodide.css
@@ -0,0 +1,50 @@
+html[data-theme="light"] {
+    @import "https://cdn.jsdelivr.net/npm/[email protected]/tomorrow.css"
+}
+
+html[data-theme="dark"] {
+    @import "https://cdn.jsdelivr.net/npm/[email protected]/tomorrow-night-blue.min.css"
+}
+
+
+.ace_gutter {
+    z-index: 1;
+}
+
+.pyodide-editor {
+    width: 100%;
+    min-height: 200px;
+    max-height: 400px;
+    font-size: .85em;
+}
+
+.pyodide-editor-bar {
+    color: var(--md-primary-bg-color);
+    background-color: var(--md-primary-fg-color);
+    width: 100%;
+    font: monospace;
+    font-size: 0.75em;
+    padding: 2px 0 2px;
+}
+
+.pyodide-bar-item {
+    padding: 0 18px 0;
+    display: inline-block;
+    width: 50%;
+}
+
+.pyodide pre {
+    margin: 0;
+}
+
+.pyodide-output {
+    width: 100%;
+    margin-bottom: -15px;
+    min-height: 46px;
+    max-height: 400px
+}
+
+.pyodide-clickable {
+    cursor: pointer;
+    text-align: right;
+}