Skip to content

v0.5.0
Compare
Choose a tag to compare
@pstrope pstrope released this 29 Nov 19:10
· 7 commits to main since this release
v0.5.0
b8814cb

FCS-GX

  • Bioconda release (https://bioconda.github.io/recipes/ncbi-fcs-gx/README.html)
  • Added feature to avoid calling eutils unless absolutely necessary, i.e. can skip if --species or --out-basename is not specified.
  • Support seq-ids that include ~
  • For fcs clean genome, added option to split on FIX actions
  • Removed trailing newlines in output FASTA generated by gx clean genome
  • Improved error message for duplicate seqids in GX
  • Print out a helpful message when gx errors out due to too short assembly
  • Removed some more contaminated sequences from GXDB
  • Expanded the Fungi report category in GX to include Mucoromycota and Zoopagomycota
  • Reduced GX false positives in eukaryote repeat regions
  • Increased GX score thresholds required for calling intra-superkingdom contamination
  • Added documentation on how to specify host for metagenome
  • Updated documentation for fcs clean genome with updated examples

FCS-adaptor

  • New adaptor sequences from Pacific Biosciences, Oxford Nanopore Technologies, and Illumina
  • Excluded four transposase sequences in the prokaryotes adaptors file
  • Added option to split on ACTION_TRIM ranges from adaptor hits
Assets 2
Loading