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Fix whitespace in conda action (?)
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evolarjun committed Aug 22, 2024
1 parent 5f0c0eb commit b059503
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions .github/workflows/conda.yml
Original file line number Diff line number Diff line change
Expand Up @@ -53,15 +53,15 @@ jobs:
# Is this faster than installing miniconda myself?
# sudo chown -R 501:20 $CONDA
conda update conda
- name: Install StxTyper
run: |
- name: Install StxTyper
run: |
source /Users/runner/miniconda3/bin/activate
conda install --update-deps -c bioconda -c conda-forge -y ncbi-stxtyper
- name: Download tests
run: |
BASE_URL=https://raw.githubusercontent.com/${GITHUB_REPOSITORY}/master
- name: Download tests
run: |
BASE_URL=https://raw.githubusercontent.com/${GITHUB_REPOSITORY}/master
curl --silent --location -O ${BASE_URL}/test_stxtyper.sh
- name: Run tests
- name: Run tests
source /usr/share/miniconda/bin/activate
echo CONDA_PREFIX = $CONDA_PREFIX
bash ./test_stxtyper.sh path
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