Added test for PD-5181 (multiple hits)

ncbi · Dec 20, 2024 · b9cbc08 · b9cbc08
1 parent fc3dab3
commit b9cbc08
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/test/cases.expected b/test/cases.expected
@@ -4,5 +4,5 @@ PD-4797_multirow	stx1	PARTIAL	100.00	1625	2852	-	AAA98347.1	stxA1a	100.00	100.00
 PD-4897_multirow_contig_end	stx2	PARTIAL_CONTIG_END		11	274	+					AAA16361.1	stxB2b	100.00	100.00
 PD-4898_A2a_B2l	stx2a	COMPLETE	100.00	718	1958	+	QZL10984.1	stxA2a	100.00	100.00	QZL10985.1	stxB2	100.00	100.00
 PD-5064_ambiguous_bases	stx2	AMBIGUOUS	99.27	333	1573	-	AAA19623.1	stxA2	99.38	100.00	AAM90978.1	stxB2a	98.89	100.00
-multiple_calls_overlapping_PD-5181	stx2	PARTIAL	100.00	336	1474	+	AAS07596.1	stxA2	100.00	100.00	AAA16363.1	stxB2c	100.00	62.22
+multiple_calls_overlapping_PD-5181	stx2	PARTIAL	100.00	336	1474	+	AAS07596.1	stxA2	100.00	100.00	EED0303793.1	stxB2j	100.00	63.64
 stx2d_better_stxB2k	stx2d	COMPLETE	100.00	3	1243	+	AAM22256.1	stxA2	100.00	100.00	MCW3229578.1	stxB2d	100.00	100.00
diff --git a/test_stxtyper.sh b/test_stxtyper.sh
@@ -62,7 +62,7 @@ function test_input_file {
     then
         echo "${red}not ok: $STXTYPER returned a non-zero exit value indicating a failure of the software${reset}"
         echo "#  $STXTYPER $options -n test/$test_base.fa > test/$test_base.got"
-        TEST_TEXT="$TEST_TEXT"$'\n'"Failed $test_base"
+        TEST_TEXT="$TEST_TEXT"$'\n'"${red}Failed $test_base${reset}"
         return 1
     else
         if ! diff -q "test/$test_base.expected" "test/$test_base.got"
@@ -73,7 +73,7 @@ function test_input_file {
             diff "test/$test_base.expected" "test/$test_base.got"
             echo "#  To approve run:"
             echo "#     mv test/$test_base.got test/$test_base.expected "
-            TEST_TEXT="$TEST_TEXT"$'\n'"Failed $test_base"
+            TEST_TEXT="$TEST_TEXT"$'\n'"${red}Failed $test_base${reset}"
             return 1
         else
             echo "${green}ok:${reset} test/$test_base.fa"
@@ -95,7 +95,7 @@ then
     diff "test/basic.nuc_out.expected" "test/basic.nuc_out.got"
     echo "#  To approve run:"
     echo "#     mv test/basic.nuc_out.got test/basic.nuc_out.expected "
-    TEST_TEXT="$TEST_TEXT"$'\n'"Failed basic --nucleotide_output test"
+    TEST_TEXT="$TEST_TEXT"$'\n'"${red}Failed basic --nucleotide_output test${reset}"
     FAILURES=$(( $FAILURES + 1 ))
 else 
     echo "${green}ok:${reset} --nucleotide_output test/basic.nuc_out.got options worked"