Update test data for version 1.0.27

test/amrfinder_integration2.expected

@@ -1,8 +1,8 @@
 #Protein id	Contig id	Start	Stop	Strand	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description	Hierarchy node
-NA	partial	27	1048	+	stx2_operon	Partial stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	PARTIAL	1022			99.41	337	AAA16362.1, AAS07607.1	Shiga toxin stx2	NA	NA	stxA2c, stxB2a
-NA	partial_contig_end	3	661	-	stx2_operon	Partial stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	PARTIAL_CONTIG_END	659			100.00	216	AAM70046.1, AAA16362.1	Shiga toxin stx2	NA	NA	stxB2a, stxA2c
-NA	stx1a	218	1444	+	stx1a_operon	stx1a operon	plus	VIRULENCE	STX_TYPE	STX1	STX1A	COMPLETE	1227			100.00	406	AAA98347.1, AAA71894.1	Shiga toxin stx1a	NA	NA	stxA1a, stxB1a
-NA	stx2_fs	2165	3232	+	stx2_operon	stx2 operon with frameshift	plus	VIRULENCE	STX_TYPE	STX2	STX2	FRAMESHIFT	1068			99.15	355	AAG01033.1, AAA16363.1	Shiga toxin stx2c	NA	NA	stxA2c, stxB2c
-NA	stx2_novel	216	1456	+	stx2_operon	Novel stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	COMPLETE_NOVEL	1241			99.76	410	AAA19623.1, AAA16363.1	Shiga toxin stx2c	NA	NA	stxA2c, stxB2c
+NA	partial	27	1048	+	stx2_operon	Partial stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	PARTIAL	1022			99.41	337	AAA16362.1, AAS07607.1	Shiga toxin stx2	NA	NA	stxA2c::stxB2a
+NA	partial_contig_end	3	661	-	stx2_operon	Partial stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	PARTIAL_CONTIG_END	659			100.00	216	AAM70046.1, AAA16362.1	Shiga toxin stx2	NA	NA	stxB2a::stxA2c
+NA	stx1a	218	1444	+	stx1a_operon	stx1a operon	plus	VIRULENCE	STX_TYPE	STX1	STX1A	COMPLETE	1227			100.00	406	AAA98347.1, AAA71894.1	Shiga toxin stx1a	NA	NA	stxA1a::stxB1a
+NA	stx2_fs	2165	3232	+	stx2_operon	stx2 operon with frameshift	plus	VIRULENCE	STX_TYPE	STX2	STX2	FRAMESHIFT	1068			99.15	355	AAG01033.1, AAA16363.1	Shiga toxin stx2c	NA	NA	stxA2c::stxB2c
+NA	stx2_novel	216	1456	+	stx2_operon	Novel stx2 operon	plus	VIRULENCE	STX_TYPE	STX2	STX2	COMPLETE_NOVEL	1241			99.76	410	AAA19623.1, AAA16363.1	Shiga toxin stx2c	NA	NA	stxA2c::stxB2c
 NA	stx2_stop	694	1653	+	stx2_operon	stx2 operon with internal stop	plus	VIRULENCE	STX_TYPE	STX2	STX2	INTERNAL_STOP	960			91.25	320	AUM09788.1	Shiga toxin stx2h subunit A	NA	NA	stxA2h
-NA	stx2c	1298	2538	-	stx2c_operon	stx2c operon	plus	VIRULENCE	STX_TYPE	STX2	STX2C	COMPLETE	1241			100.00	410	AAA16363.1, AAS07596.1	Shiga toxin stx2c	NA	NA	stxB2c, stxA2a
+NA	stx2c	1298	2538	-	stx2c_operon	stx2c operon	plus	VIRULENCE	STX_TYPE	STX2	STX2C	COMPLETE	1241			100.00	410	AAA16363.1, AAS07596.1	Shiga toxin stx2c	NA	NA	stxB2c::stxA2a