Merge pull request #437 from ncihtan/cite-seq-L1-cdna-patch #93
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| # This workflow is used to push changed HTAN.model.csv | |
| # to BigQuery table located at `htan-dcc.metadata.data-model` | |
| name: Add updated schema to BigQuery | |
| on: | |
| push: | |
| branches: main | |
| paths: 'HTAN.model.csv' | |
| workflow_dispatch: | |
| jobs: | |
| add-to-bq: | |
| name: Add schema to BQ | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: 'read' | |
| id-token: 'write' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - id: 'auth' | |
| name: 'Authenticate to Google Cloud' | |
| uses: 'google-github-actions/auth@v2' | |
| with: | |
| workload_identity_provider: ${{ secrets.GOOGLE_WIF }} | |
| service_account: '[email protected]' | |
| - name: 'Set up Cloud SDK' | |
| uses: 'google-github-actions/setup-gcloud@v2' | |
| with: | |
| version: '>= 363.0.0' | |
| - name: 'Use gcloud CLI' | |
| run: 'gcloud info' | |
| - name: Install Google Cloud BigQuery Client | |
| shell: bash | |
| run: | | |
| pip3 install google-cloud-bigquery | |
| - name: Load .csv to BQ with defined schema | |
| shell: bash | |
| run: | | |
| bq load --source_format=CSV \ | |
| --replace=true \ | |
| --skip_leading_rows=1 \ | |
| htan-dcc:metadata.data-model \ | |
| HTAN.model.csv \ | |
| ./.github/workflows/BQ.table.schema.json | |