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Build Dependencies Table #3

Build Dependencies Table

Build Dependencies Table #3

name: Build Dependencies Table
on:
release:
types: [published]
jobs:
update-table:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install requests pandas
- name: Fetch attribute table
run: |
python - <<EOF
import requests
import pandas as pd
url = "https://schematic.api.sagebionetworks.org/v1/ui/" # Endpoint URL
jsonld_url = "https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld"
response = requests.get(jsonld_url)
response.raise_for_status()
model_jsonld = response.json()
response = requests.post(url, json=model_jsonld)
response.raise_for_status()
attribute_table = response.json() # Adjust this line based on the actual response format
df = pd.DataFrame(attribute_table)
df.to_csv('HTAN.dependencies.csv', index=False)
EOF
- name: Commit changes
run: |
git config --global user.name "github-actions[bot]"
git config --global user.email "github-actions[bot]@users.noreply.github.com"
git add HTAN.dependencies.csv
git commit -m "Update HTAN.dependencies.csv with the latest attribute table"
- name: Create Pull Request
uses: aditigopalan/create-pull-request@v3
with:
token: ${{ secrets.GITHUB_TOKEN }}
commit-message: "Update HTAN.dependencies.csv"
branch: update-attribute-table
title: "Update HTAN.dependencies.csv"
body: "This PR updates HTAN.dependencies.csv with the latest attribute table."