Fix MAGMA executable links #12
Annotations
4 errors and 11 warnings
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Run neurogenomics/rworkflows@master
No such keg: /opt/homebrew/Cellar/r
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Run neurogenomics/rworkflows@master
Test failures
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Run neurogenomics/rworkflows@master
R CMD check found ERRORs
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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Run neurogenomics/rworkflows@master
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Run neurogenomics/rworkflows@master
harfbuzz 8.4.0 is already installed and up-to-date.
To reinstall 8.4.0, run:
brew reinstall harfbuzz
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Run neurogenomics/rworkflows@master
macOS's Gatekeeper has been disabled for this Cask
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Run neurogenomics/rworkflows@master
dependency ‘BiocStyle’ is not available
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Run neurogenomics/rworkflows@master
No annotLevel 1 celltypes reach significance @ q-value<=0.05 returning NULL.
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Run neurogenomics/rworkflows@master
No annotLevel 1 celltypes reach significance @ q-value<=0.05 returning NULL.
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Run neurogenomics/rworkflows@master
no MAGMA executable found.
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Run neurogenomics/rworkflows@master
no MAGMA executable found.
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Run neurogenomics/rworkflows@master
no MAGMA executable found.
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-release-r-auto-results", "Windows-biocversion-release-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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