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neuroinformatics-unit · Jun 23, 2023 · 8825bf5 · 8825bf5
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diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
diff --git a/.doctrees/guides/Data-sharing.doctree → .doctrees/open_science/Data-sharing.doctree b/.doctrees/guides/Data-sharing.doctree → .doctrees/open_science/Data-sharing.doctree
diff --git a/.doctrees/guides/Licensing.doctree → .doctrees/open_science/Licensing.doctree b/.doctrees/guides/Licensing.doctree → .doctrees/open_science/Licensing.doctree
diff --git a/.doctrees/guides/index.doctree → .doctrees/open_science/index.doctree b/.doctrees/guides/index.doctree → .doctrees/open_science/index.doctree
diff --git a/_sources/guides/index.md.txt b/_sources/guides/index.md.txt
diff --git a/_sources/index.md.txt b/_sources/index.md.txt
@@ -10,5 +10,5 @@ The information is primarily aimed at researchers at the [Sainsbury Wellcome Cen
 
 data_analysis/index
 programming/index
-guides/index
+open_science/index
 ```
diff --git a/_sources/guides/Data-sharing.md.txt → _sources/open_science/Data-sharing.md.txt b/_sources/guides/Data-sharing.md.txt → _sources/open_science/Data-sharing.md.txt
diff --git a/_sources/guides/Licensing.md.txt → _sources/open_science/Licensing.md.txt b/_sources/guides/Licensing.md.txt → _sources/open_science/Licensing.md.txt
diff --git a/_sources/open_science/index.md.txt b/_sources/open_science/index.md.txt
@@ -0,0 +1,10 @@
+# Open Science
+
+A collection of long-form guides on topics related to open science.
+
+```{toctree}
+:maxdepth: 2
+
+Licensing
+Data-sharing
+```
diff --git a/data_analysis/Behaviour.html b/data_analysis/Behaviour.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/data_analysis/Electrophysiology.html b/data_analysis/Electrophysiology.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/data_analysis/Histology.html b/data_analysis/Histology.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/data_analysis/Imaging.html b/data_analysis/Imaging.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/data_analysis/index.html b/data_analysis/index.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/genindex.html b/genindex.html
@@ -147,8 +147,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -256,8 +256,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 

diff --git a/index.html b/index.html
@@ -149,8 +149,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -262,8 +262,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -351,9 +351,9 @@ <h1>Neuroinformatics Unit HowTo<a class="headerlink" href="#neuroinformatics-uni
 <li class="toctree-l2"><a class="reference internal" href="programming/Python.html">Python</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="guides/index.html">Guides</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="guides/Licensing.html">Software licensing</a></li>
-<li class="toctree-l2"><a class="reference internal" href="guides/Data-sharing.html">Data Sharing</a></li>
+<li class="toctree-l1"><a class="reference internal" href="open_science/index.html">Open Science</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="open_science/Licensing.html">Software licensing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="open_science/Data-sharing.html">Data Sharing</a></li>
 </ul>
 </li>
 </ul>

diff --git a/objects.inv b/objects.inv
diff --git a/guides/Data-sharing.html → open_science/Data-sharing.html b/guides/Data-sharing.html → open_science/Data-sharing.html
@@ -39,8 +39,8 @@
     <script src="../_static/doctools.js"></script>
     <script src="../_static/sphinx_highlight.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script>DOCUMENTATION_OPTIONS.pagename = 'guides/Data-sharing';</script>
-    <link rel="canonical" href="https://howto.neuroinformatics.dev/guides/Data-sharing.html" />
+    <script>DOCUMENTATION_OPTIONS.pagename = 'open_science/Data-sharing';</script>
+    <link rel="canonical" href="https://howto.neuroinformatics.dev/open_science/Data-sharing.html" />
     <link rel="icon" href="../_static/logo_light.png"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
@@ -150,7 +150,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="index.html">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -263,7 +263,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="index.html">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -352,7 +352,7 @@
       </a>
     </li>
 
-    <li class="breadcrumb-item"><a href="index.html" class="nav-link">Guides</a></li>
+    <li class="breadcrumb-item"><a href="index.html" class="nav-link">Open Science</a></li>
 
     <li class="breadcrumb-item active" aria-current="page">Data Sharing</li>
   </ul>
@@ -566,7 +566,7 @@ <h2>Assistance<a class="headerlink" href="#assistance" title="Permalink to this
 
   <div class="sidebar-secondary-item">
   <div class="tocsection sourcelink">
-    <a href="../_sources/guides/Data-sharing.md.txt">
+    <a href="../_sources/open_science/Data-sharing.md.txt">
       <i class="fa-solid fa-file-lines"></i> Show Source
     </a>
   </div>

diff --git a/guides/Licensing.html → open_science/Licensing.html b/guides/Licensing.html → open_science/Licensing.html
@@ -39,13 +39,13 @@
     <script src="../_static/doctools.js"></script>
     <script src="../_static/sphinx_highlight.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script>DOCUMENTATION_OPTIONS.pagename = 'guides/Licensing';</script>
-    <link rel="canonical" href="https://howto.neuroinformatics.dev/guides/Licensing.html" />
+    <script>DOCUMENTATION_OPTIONS.pagename = 'open_science/Licensing';</script>
+    <link rel="canonical" href="https://howto.neuroinformatics.dev/open_science/Licensing.html" />
     <link rel="icon" href="../_static/logo_light.png"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Data Sharing" href="Data-sharing.html" />
-    <link rel="prev" title="Guides" href="index.html" />
+    <link rel="prev" title="Open Science" href="index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   </head>
@@ -151,7 +151,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="index.html">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -264,7 +264,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="index.html">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -353,7 +353,7 @@
       </a>
     </li>
 
-    <li class="breadcrumb-item"><a href="index.html" class="nav-link">Guides</a></li>
+    <li class="breadcrumb-item"><a href="index.html" class="nav-link">Open Science</a></li>
 
     <li class="breadcrumb-item active" aria-current="page">Software licensing</li>
   </ul>
@@ -455,7 +455,7 @@ <h2>Acknowledgements<a class="headerlink" href="#acknowledgements" title="Permal
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">Guides</p>
+        <p class="prev-next-title">Open Science</p>
       </div>
     </a>
     <a class="right-next"
@@ -504,7 +504,7 @@ <h2>Acknowledgements<a class="headerlink" href="#acknowledgements" title="Permal
 
   <div class="sidebar-secondary-item">
   <div class="tocsection sourcelink">
-    <a href="../_sources/guides/Licensing.md.txt">
+    <a href="../_sources/open_science/Licensing.md.txt">
       <i class="fa-solid fa-file-lines"></i> Show Source
     </a>
   </div>

diff --git a/guides/index.html → open_science/index.html b/guides/index.html → open_science/index.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Guides &#8212; HowTo</title>
+    <title>Open Science &#8212; HowTo</title>
 
 
 
@@ -39,8 +39,8 @@
     <script src="../_static/doctools.js"></script>
     <script src="../_static/sphinx_highlight.js"></script>
     <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
-    <script>DOCUMENTATION_OPTIONS.pagename = 'guides/index';</script>
-    <link rel="canonical" href="https://howto.neuroinformatics.dev/guides/index.html" />
+    <script>DOCUMENTATION_OPTIONS.pagename = 'open_science/index';</script>
+    <link rel="canonical" href="https://howto.neuroinformatics.dev/open_science/index.html" />
     <link rel="icon" href="../_static/logo_light.png"/>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
@@ -151,7 +151,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="#">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -264,7 +264,7 @@
 
                     <li class="nav-item current active">
                       <a class="nav-link nav-internal" href="#">
-                        Guides
+                        Open Science
                       </a>
                     </li>
 
@@ -352,7 +352,7 @@
         <i class="fa-solid fa-home"></i>
       </a>
     </li>
-    <li class="breadcrumb-item active" aria-current="page">Guides</li>
+    <li class="breadcrumb-item active" aria-current="page">Open Science</li>
   </ul>
 </nav>
 </div>
@@ -369,9 +369,9 @@
 <div id="searchbox"></div>
                 <article class="bd-article" role="main">
 
-  <section class="tex2jax_ignore mathjax_ignore" id="guides">
-<h1>Guides<a class="headerlink" href="#guides" title="Permalink to this heading">#</a></h1>
-<p>A collection of long-form guides on specific topics.</p>
+  <section class="tex2jax_ignore mathjax_ignore" id="open-science">
+<h1>Open Science<a class="headerlink" href="#open-science" title="Permalink to this heading">#</a></h1>
+<p>A collection of long-form guides on topics related to open science.</p>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="Licensing.html">Software licensing</a><ul>
@@ -441,7 +441,7 @@ <h1>Guides<a class="headerlink" href="#guides" title="Permalink to this heading"
 
   <div class="sidebar-secondary-item">
   <div class="tocsection sourcelink">
-    <a href="../_sources/guides/index.md.txt">
+    <a href="../_sources/open_science/index.md.txt">
       <i class="fa-solid fa-file-lines"></i> Show Source
     </a>
   </div>

diff --git a/programming/IDEs.html b/programming/IDEs.html
@@ -150,8 +150,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>
 
@@ -263,8 +263,8 @@
 
 
                     <li class="nav-item">
-                      <a class="nav-link nav-internal" href="../guides/index.html">
-                        Guides
+                      <a class="nav-link nav-internal" href="../open_science/index.html">
+                        Open Science
                       </a>
                     </li>