Test new cookiecutter

[lauraporta]

Description

Add new changes introduced in the cookie-cutter. Created via cruft.

• Bug fix
• Addition of a new feature
• Other

Why is this PR needed? / What does this PR do?
Introduce the new hook for check-manifest in the pre-commit.
Cookie-cutter PR #65

Docs have been added as well

How has this PR been tested?

Tested locally, actions running on GitHub.

Here the output of pre-commit run --all-files

check docstring is first.................................................Passed
check that executables have shebangs.................(no files to check)Skipped
check for merge conflicts................................................Passed
check toml...............................................................Passed
fix end of files.........................................................Passed
mixed line ending........................................................Passed
fix requirements.txt.....................................................Passed
trim trailing whitespace.................................................Passed
ruff.....................................................................Passed
black....................................................................Passed
mypy.....................................................................Passed
check-manifest...........................................................Passed

Is this a breaking change?

No

Does this PR require an update to the documentation?

No

Checklist:

• The code has been tested locally
• Tests have been added to cover all new functionality
• The documentation has been updated to reflect any changes
• The code has been formatted with pre-commit

[niksirbi]

@lauraporta you have to modify docs/source/api_index.rst, because it's now trying to create API docs for nonexistent modules. You can also get rid of it completely and delete it from the TOC.
If you want the docs page to build, you'll also have to enable GH pages in this repo's settings

[codecov]

Codecov Report

❗ No coverage uploaded for pull request base (main@5728e8f). Click here to learn what that means.
The diff coverage is n/a.

@@           Coverage Diff           @@
##             main      #66   +/-   ##
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  Coverage        ?   74.14%           
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  Files           ?       12           
  Lines           ?      642           
  Branches        ?        0           
=======================================
  Hits            ?      476           
  Misses          ?      166           
  Partials        ?        0           

[niksirbi]

Looks good to me now.