Guide Notebooks Regression #25
Workflow file for this run
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| name: Guide Notebooks Regression | |
| run-name: Guide Notebooks Regression | |
| on: [push] | |
| jobs: | |
| guide-notebooks-regression: | |
| if: ${{ false }} | |
| runs-on: self-hosted | |
| steps: | |
| - run: echo "automatically triggered by a ${{ github.event_name }} event" | |
| - run: echo "running on a ${{ runner.os }} server hosted by github" | |
| - name: clone | |
| uses: actions/checkout@v3 | |
| - name: install | |
| run: | | |
| cd ${{ github.workspace }} | |
| python -m venv env | |
| source env/bin/activate | |
| pip install --upgrade pip | |
| pip install jupyter | |
| pip install -e . | |
| nobrainer info | |
| - name: run | |
| run: | | |
| cat<<EOF > run.sh | |
| #!/bin/bash | |
| source env/bin/activate | |
| $@ | |
| EOF | |
| for notebook in $(ls guide/[0-9][0-9]-*.ipynb); do | |
| srun \ | |
| -p gablab \ | |
| --mem=16G \ | |
| -t 10 \ | |
| singularity exec \ | |
| --nv -B /om \ | |
| ${HOME}/img/tensorflow_latest-gpu.sif \ | |
| ./run.sh \ | |
| jupyter nbconvert \ | |
| --execute ${notebook} \ | |
| --to markdown \ | |
| --stdout | |
| done |