fixed imports in models again

nobrainer/ext/SynthSeg/estimate_priors.py

@@ -25,7 +25,7 @@
 
 
 # third-party imports
-from ext.lab2im import edit_volumes, utils
+from nobrainer.ext.lab2im import edit_volumes, utils
 
 
 def sample_intensity_stats_from_image(

nobrainer/ext/SynthSeg/evaluate.py

@@ -17,7 +17,7 @@
 import os
 
 # third-party imports
-from ext.lab2im import edit_volumes, utils
+from nobrainer.ext.lab2im import edit_volumes, utils
 import numpy as np
 from scipy.ndimage.morphology import distance_transform_edt
 from scipy.stats import wilcoxon

nobrainer/ext/SynthSeg/metrics_model.py

@@ -14,7 +14,7 @@
 """
 
 # third-party imports
-from ext.lab2im import layers
+from nobrainer.ext.lab2im import layers
 import keras.layers as KL
 from keras.models import Model
 

nobrainer/ext/SynthSeg/predict.py

@@ -19,11 +19,11 @@
 import os
 
 # project imports
-from SynthSeg import evaluate
+from nobrainer.ext.SynthSeg import evaluate
 
 # third-party imports
-from ext.lab2im import edit_volumes, layers, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_volumes, layers, utils
+from nobrainer.ext.neuron import models as nrn_models
 import keras.backend as K
 import keras.layers as KL
 from keras.models import Model

nobrainer/ext/SynthSeg/predict_denoiser.py

@@ -17,12 +17,12 @@
 import os
 
 # project imports
-from SynthSeg import evaluate
-from SynthSeg.predict import postprocess, write_csv
+from nobrainer.ext.SynthSeg import evaluate
+from nobrainer.ext.SynthSeg.predict import postprocess, write_csv
 
 # third-party imports
-from ext.lab2im import edit_volumes, layers, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_volumes, layers, utils
+from nobrainer.ext.neuron import models as nrn_models
 import keras.layers as KL
 from keras.models import Model
 import numpy as np

nobrainer/ext/SynthSeg/predict_group.py

@@ -17,12 +17,12 @@
 import os
 
 # project imports
-from SynthSeg import evaluate
-from SynthSeg.predict import write_csv
+from nobrainer.ext.SynthSeg import evaluate
+from nobrainer.ext.SynthSeg.predict import write_csv
 
 # third-party imports
-from ext.lab2im import edit_volumes, layers, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_volumes, layers, utils
+from nobrainer.ext.neuron import models as nrn_models
 import keras.layers as KL
 from keras.models import Model
 import numpy as np

nobrainer/ext/SynthSeg/predict_qc.py

@@ -17,11 +17,11 @@
 import os
 
 # project imports
-from SynthSeg import evaluate
+from nobrainer.ext.SynthSeg import evaluate
 
 # third-party imports
-from ext.lab2im import edit_volumes, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_volumes, utils
+from nobrainer.ext.neuron import models as nrn_models
 import keras.layers as KL
 from keras.models import Model
 import numpy as np

nobrainer/ext/SynthSeg/predict_synthseg.py

@@ -19,12 +19,12 @@
 import traceback
 
 # project imports
-from SynthSeg import evaluate
-from SynthSeg.predict import get_flip_indices, write_csv
+from nobrainer.ext.SynthSeg import evaluate
+from nobrainer.ext.SynthSeg.predict import get_flip_indices, write_csv
 
 # third-party imports
-from ext.lab2im import edit_volumes, layers, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_volumes, layers, utils
+from nobrainer.ext.neuron import models as nrn_models
 import keras.backend as K
 import keras.layers as KL
 from keras.models import Model

nobrainer/ext/SynthSeg/sample_segmentation_pairs_d.py

@@ -19,11 +19,11 @@
 import os
 
 # third-party imports
-from ext.lab2im import edit_tensors as l2i_et
-from ext.lab2im import edit_volumes
-from ext.lab2im import layers as layers
-from ext.lab2im import utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_tensors as l2i_et
+from nobrainer.ext.lab2im import edit_volumes
+from nobrainer.ext.lab2im import layers as layers
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.neuron import models as nrn_models
 from keras import models
 import keras.layers as KL
 import numpy as np

nobrainer/ext/SynthSeg/training.py

@@ -23,13 +23,13 @@
 import os
 
 # project imports
-from SynthSeg import metrics_model as metrics
-from SynthSeg.brain_generator import BrainGenerator
+from nobrainer.ext.SynthSeg import metrics_model as metrics
+from nobrainer.processing.brain_generator import BrainGenerator
 
 # third-party imports
-from ext.lab2im import layers, utils
-from ext.neuron import layers as nrn_layers
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import layers, utils
+from nobrainer.ext.neuron import layers as nrn_layers
+from nobrainer.ext.neuron import models as nrn_models
 import keras
 from keras import models
 import keras.callbacks as KC

nobrainer/ext/SynthSeg/training_denoiser.py

@@ -17,14 +17,14 @@
 import os
 
 # project imports
-from SynthSeg import metrics_model as metrics
-from SynthSeg.labels_to_image_model import get_shapes
-from SynthSeg.training import train_model
-from SynthSeg.training_supervised import build_model_inputs
+from nobrainer.ext.SynthSeg import metrics_model as metrics
+from nobrainer.models.labels_to_image_model import get_shapes
+from nobrainer.ext.SynthSeg.training import train_model
+from nobrainer.ext.SynthSeg.training_supervised import build_model_inputs
 
 # third-party imports
-from ext.lab2im import layers, utils
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import layers, utils
+from nobrainer.ext.neuron import models as nrn_models
 from keras import layers as KL
 from keras import models
 import numpy as np

nobrainer/ext/SynthSeg/training_group.py

@@ -22,16 +22,16 @@
 import os
 
 # project imports
-from SynthSeg import metrics_model as metrics
-from SynthSeg.brain_generator import BrainGenerator
-from SynthSeg.labels_to_image_model import get_shapes
-from SynthSeg.training import train_model
+from nobrainer.ext.SynthSeg import metrics_model as metrics
+from nobrainer.processing.brain_generator import BrainGenerator
+from nobrainer.models.labels_to_image_model import get_shapes
+from nobrainer.ext.SynthSeg.training import train_model
 
 # third-party imports
-from ext.lab2im import edit_tensors as l2i_et
-from ext.lab2im import layers, utils
-from ext.lab2im.edit_volumes import get_ras_axes
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_tensors as l2i_et
+from nobrainer.ext.lab2im import layers, utils
+from nobrainer.ext.lab2im.edit_volumes import get_ras_axes
+from nobrainer.ext.neuron import models as nrn_models
 from keras import models
 import keras.layers as KL
 import numpy as np

nobrainer/ext/SynthSeg/training_qc.py

@@ -23,14 +23,14 @@
 import os
 
 # project imports
-from SynthSeg import metrics_model as metrics
+from nobrainer.ext.SynthSeg import metrics_model as metrics
 
 # third-party imports
-from ext.lab2im import layers as l2i_layers
-from ext.lab2im import utils
-from ext.neuron import layers as nrn_layers
-from ext.neuron import models as nrn_models
-from ext.neuron import utils as nrn_utils
+from nobrainer.ext.lab2im import layers as l2i_layers
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.neuron import layers as nrn_layers
+from nobrainer.ext.neuron import models as nrn_models
+from nobrainer.ext.neuron import utils as nrn_utils
 import keras
 from keras import models
 import keras.backend as K

nobrainer/ext/SynthSeg/training_supervised.py

@@ -22,15 +22,15 @@
 import os
 
 # project imports
-from SynthSeg import metrics_model as metrics
-from SynthSeg.labels_to_image_model import get_shapes
-from SynthSeg.training import train_model
+from nobrainer.ext.SynthSeg import metrics_model as metrics
+from nobrainer.models.labels_to_image_model import get_shapes
+from nobrainer.ext.SynthSeg.training import train_model
 
 # third-party imports
-from ext.lab2im import edit_tensors as l2i_et
-from ext.lab2im import layers, utils
-from ext.lab2im.edit_volumes import get_ras_axes
-from ext.neuron import models as nrn_models
+from nobrainer.ext.lab2im import edit_tensors as l2i_et
+from nobrainer.ext.lab2im import layers, utils
+from nobrainer.ext.lab2im.edit_volumes import get_ras_axes
+from nobrainer.ext.neuron import models as nrn_models
 from keras import models
 import keras.layers as KL
 import numpy as np

nobrainer/ext/SynthSeg/validate.py

@@ -20,10 +20,10 @@
 import re
 
 # project imports
-from SynthSeg.predict import predict
+from nobrainer.ext.SynthSeg.predict import predict
 
 # third-party imports
-from ext.lab2im import utils
+from nobrainer.ext.lab2im import utils
 import matplotlib.pyplot as plt
 import numpy as np
 from tensorflow.python.summary.summary_iterator import summary_iterator

nobrainer/ext/SynthSeg/validate_denoiser.py

@@ -17,10 +17,10 @@
 import os
 
 # project imports
-from SynthSeg.predict_denoiser import predict
+from nobrainer.ext.SynthSeg.predict_denoiser import predict
 
 # third-party imports
-from ext.lab2im import utils
+from nobrainer.ext.lab2im import utils
 
 
 def validate_training(

nobrainer/ext/SynthSeg/validate_group.py

@@ -17,10 +17,10 @@
 import os
 
 # project imports
-from SynthSeg.predict_group import predict
+from nobrainer.ext.SynthSeg.predict_group import predict
 
 # third-party imports
-from ext.lab2im import utils
+from nobrainer.ext.lab2im import utils
 
 
 def validate_training(

nobrainer/ext/SynthSeg/validate_qc.py

@@ -20,10 +20,10 @@
 import re
 
 # project imports
-from SynthSeg.predict_qc import predict
+from nobrainer.ext.SynthSeg.predict_qc import predict
 
 # third-party imports
-from ext.lab2im import utils
+from nobrainer.ext.lab2im import utils
 import matplotlib.pyplot as plt
 import numpy as np
 from tensorflow.python.summary.summary_iterator import summary_iterator

nobrainer/models/labels_to_image_model.py

@@ -21,9 +21,9 @@
 import tensorflow as tf
 
 # third-party imports
-from nobrainer.SynthSeg.ext.lab2im import edit_tensors as l2i_et
-from nobrainer.SynthSeg.ext.lab2im import layers, utils
-from nobrainer.SynthSeg.ext.lab2im.edit_volumes import get_ras_axes
+from nobrainer.ext.lab2im import edit_tensors as l2i_et
+from nobrainer.ext.lab2im import layers, utils
+from nobrainer.ext.lab2im.edit_volumes import get_ras_axes
 
 
 def labels_to_image_model(

nobrainer/processing/brain_generator.py

@@ -16,7 +16,7 @@
 # python imports
 import numpy as np
 
-from nobrainer.ext.SynthSeg.labels_to_image_model import labels_to_image_model
+from nobrainer.models.labels_to_image_model import labels_to_image_model
 
 # project imports
 from nobrainer.ext.SynthSeg.model_inputs import build_model_inputs