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valosekj committed Jul 30, 2024
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8 changes: 8 additions & 0 deletions _sources/data/dataset-curation.md
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Expand Up @@ -128,6 +128,14 @@ Examples of special cases below:
- If you need to differentiate between sequences acquired with **different orientations**, use the `acq-ax`, `acq-cor`, or `acq-sag` tag. For example, `sub-001_acq-ax_T1w.nii.gz`.
- If you need to differentiate between different **magnetization transfer (MT)** sequences, use the [`flip-<index>_mt-<on|off>`](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#anatomy-imaging-data) tag. For example, `sub-001_flip-1_mt-on_MTS.nii.gz`, `sub-001_flip-1_mt-off_MTS.nii.gz` or `sub-001_flip-2_mt-off_MTS.nii.gz`.

> [!NOTE]
> "old" vs "new" MT naming ([source](https://github.com/spine-generic/data-multi-subject/pull/135#issue-1535423905)):
> ```console
> acq-MTon_MTS → flip-1_mt-on_MTS
> acq-MToff_MTS → flip-1_mt-off_MTS
> acq-T1w_MTS → flip-2_mt-off_MTS
> ```
```{note}
If you to combine several above mentioned tags, use camelCase. For example, `sub-001_acq-cspineSag_T1w.nii.gz`.
```
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9 changes: 9 additions & 0 deletions data/dataset-curation.html
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Expand Up @@ -647,6 +647,15 @@ <h3>Raw entities<a class="headerlink" href="#raw-entities" title="Link to this h
<li><p>If you need to differentiate between sequences acquired with <strong>different orientations</strong>, use the <code class="docutils literal notranslate"><span class="pre">acq-ax</span></code>, <code class="docutils literal notranslate"><span class="pre">acq-cor</span></code>, or <code class="docutils literal notranslate"><span class="pre">acq-sag</span></code> tag. For example, <code class="docutils literal notranslate"><span class="pre">sub-001_acq-ax_T1w.nii.gz</span></code>.</p></li>
<li><p>If you need to differentiate between different <strong>magnetization transfer (MT)</strong> sequences, use the <a class="reference external" href="https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#anatomy-imaging-data"><code class="docutils literal notranslate"><span class="pre">flip-&lt;index&gt;_mt-&lt;on|off&gt;</span></code></a> tag. For example, <code class="docutils literal notranslate"><span class="pre">sub-001_flip-1_mt-on_MTS.nii.gz</span></code>, <code class="docutils literal notranslate"><span class="pre">sub-001_flip-1_mt-off_MTS.nii.gz</span></code> or <code class="docutils literal notranslate"><span class="pre">sub-001_flip-2_mt-off_MTS.nii.gz</span></code>.</p></li>
</ul>
<blockquote>
<div><p>[!NOTE]
“old” vs “new” MT naming (<a class="reference external" href="https://github.com/spine-generic/data-multi-subject/pull/135#issue-1535423905">source</a>):</p>
<div class="highlight-console notranslate"><div class="highlight"><pre><span></span><span class="go">acq-MTon_MTS → flip-1_mt-on_MTS</span>
<span class="go">acq-MToff_MTS → flip-1_mt-off_MTS</span>
<span class="go">acq-T1w_MTS → flip-2_mt-off_MTS</span>
</pre></div>
</div>
</div></blockquote>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p>If you to combine several above mentioned tags, use camelCase. For example, <code class="docutils literal notranslate"><span class="pre">sub-001_acq-cspineSag_T1w.nii.gz</span></code>.</p>
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2 changes: 1 addition & 1 deletion searchindex.js

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