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neuropsychology · Jul 28, 2024 · 8c5cc1f · 8c5cc1f
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diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/examples/bio_custom/bio_custom.doctree b/.doctrees/examples/bio_custom/bio_custom.doctree
diff --git a/.doctrees/examples/bio_eventrelated/bio_eventrelated.doctree b/.doctrees/examples/bio_eventrelated/bio_eventrelated.doctree
diff --git a/.doctrees/examples/ecg_generate_12leads/ecg_generate_12leads.doctree b/.doctrees/examples/ecg_generate_12leads/ecg_generate_12leads.doctree
diff --git a/.doctrees/examples/ecg_heartbeats/ecg_heartbeats.doctree b/.doctrees/examples/ecg_heartbeats/ecg_heartbeats.doctree
diff --git a/.doctrees/examples/eda_peaks/eda_peaks.doctree b/.doctrees/examples/eda_peaks/eda_peaks.doctree
diff --git a/.doctrees/examples/eeg_complexity/eeg_complexity.doctree b/.doctrees/examples/eeg_complexity/eeg_complexity.doctree
diff --git a/.doctrees/examples/eeg_microstates/eeg_microstates.doctree b/.doctrees/examples/eeg_microstates/eeg_microstates.doctree
diff --git a/.doctrees/examples/eeg_power/eeg_power.doctree b/.doctrees/examples/eeg_power/eeg_power.doctree
diff --git a/.doctrees/examples/eog_analyze/eog_analyze.doctree b/.doctrees/examples/eog_analyze/eog_analyze.doctree
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diff --git a/.doctrees/examples/signal_simulation/signal_simulation.doctree b/.doctrees/examples/signal_simulation/signal_simulation.doctree
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diff --git a/_images/p_signal_surrogate1.png b/_images/p_signal_surrogate1.png
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diff --git a/examples/bio_custom/bio_custom.html b/examples/bio_custom/bio_custom.html
@@ -469,6 +469,11 @@ <h1>Customize your Processing Pipeline<a class="headerlink" href="#customize-you
 </pre></div>
 </div>
 </div>
+<div class="cell_output docutils container">
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Matplotlib is building the font cache; this may take a moment.
+</pre></div>
+</div>
+</div>
 </div>
 <div class="cell tag_remove-input docutils container">
 </div>
@@ -490,7 +495,7 @@ <h2>The Default NeuroKit processing pipeline<a class="headerlink" href="#the-def
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/6d389455c535fa4cbb21150e33f84258fd3410396a41c47131bccfcdc207db9c.png" src="../../_images/6d389455c535fa4cbb21150e33f84258fd3410396a41c47131bccfcdc207db9c.png" />
+<img alt="../../_images/3217df1f178cfbf53ea750d0e71e421f3fc5fee7396242652a3979198898ebfa.png" src="../../_images/3217df1f178cfbf53ea750d0e71e421f3fc5fee7396242652a3979198898ebfa.png" />
 </div>
 </div>
 </section>
@@ -538,7 +543,7 @@ <h2>Building your own <code class="docutils literal notranslate"><span class="pr
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/a1df997e6c2a5dd77c63ce8a6bccdf6d8eb59b67024f5d79bcc5c2436ad86cb3.png" src="../../_images/a1df997e6c2a5dd77c63ce8a6bccdf6d8eb59b67024f5d79bcc5c2436ad86cb3.png" />
+<img alt="../../_images/d6e71e897255974471205bc0355a3087e02428c76dfdb84093e9a7ca971863ef.png" src="../../_images/d6e71e897255974471205bc0355a3087e02428c76dfdb84093e9a7ca971863ef.png" />
 </div>
 </div>
 </section>
@@ -630,7 +635,7 @@ <h2>Customize even more!<a class="headerlink" href="#customize-even-more" title=
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/5bc7d67109d0670364743fbb0b85914920221860ef86e2f8302bfb11d026d1c1.png" src="../../_images/5bc7d67109d0670364743fbb0b85914920221860ef86e2f8302bfb11d026d1c1.png" />
+<img alt="../../_images/cca178807ade3aba4111ab501fba41c71a28ad8144492735188e79d8344c43ea.png" src="../../_images/cca178807ade3aba4111ab501fba41c71a28ad8144492735188e79d8344c43ea.png" />
 </div>
 </div>
 <p>This doesn’t look bad :) <strong>Can you do better?</strong></p>

diff --git a/examples/bio_eventrelated/bio_eventrelated.html b/examples/bio_eventrelated/bio_eventrelated.html
@@ -530,7 +530,7 @@ <h2>Find Events<a class="headerlink" href="#find-events" title="Link to this hea
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/4f6361f3a1bdac5a161b1f0f97065defa1514812a52eed9367a5a5a035e46181.png" src="../../_images/4f6361f3a1bdac5a161b1f0f97065defa1514812a52eed9367a5a5a035e46181.png" />
+<img alt="../../_images/9d36a4e7989dc9be23e00f43be2bf1236ac552fffcec4463921015427846e247.png" src="../../_images/9d36a4e7989dc9be23e00f43be2bf1236ac552fffcec4463921015427846e247.png" />
 </div>
 </div>
 <p>The output of <a class="reference external" href="https://neuropsychology.github.io/NeuroKit/functions/functions_events.html#events-plot">events_plot()</a> shows the corresponding events in the signal, with the blue dashed line representing a Negative event and red dashed line representing a Neutral event.</p>
@@ -641,11 +641,11 @@ <h2>Manually Extract Event Related Features<a class="headerlink" href="#manually
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>C:\Users\runneradmin\AppData\Local\Temp\ipykernel_7080\4246861920.py:12: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>C:\Users\runneradmin\AppData\Local\Temp\ipykernel_3668\4246861920.py:12: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
   ecg_mean = epoch[&quot;ECG_Rate&quot;][0:4].mean()  # Mean heart rate in the 0-4 seconds
-C:\Users\runneradmin\AppData\Local\Temp\ipykernel_7080\4246861920.py:18: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
+C:\Users\runneradmin\AppData\Local\Temp\ipykernel_3668\4246861920.py:18: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
   rsp_rate = epoch[&quot;RSP_Rate&quot;][0:6].mean()  # Longer window for RSP that has a slower dynamic
-C:\Users\runneradmin\AppData\Local\Temp\ipykernel_7080\4246861920.py:24: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
+C:\Users\runneradmin\AppData\Local\Temp\ipykernel_3668\4246861920.py:24: FutureWarning: The behavior of obj[i:j] with a float-dtype index is deprecated. In a future version, this will be treated as positional instead of label-based. For label-based slicing, use obj.loc[i:j] instead
   scr_max = epoch[&quot;SCR_Amplitude&quot;][0:6].max()  # Maximum SCR peak
 </pre></div>
 </div>

diff --git a/examples/ecg_generate_12leads/ecg_generate_12leads.html b/examples/ecg_generate_12leads/ecg_generate_12leads.html
@@ -481,7 +481,7 @@ <h2>Normal Multi-lead ECG<a class="headerlink" href="#normal-multi-lead-ecg" tit
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/77fba950a70805d05786377d40adc0b87a29b3efdd0549c9b9183e744c8ad66e.png" src="../../_images/77fba950a70805d05786377d40adc0b87a29b3efdd0549c9b9183e744c8ad66e.png" />
+<img alt="../../_images/4b65c7b2e9b8bc61149a9958a4db7b072b49a2a3f65ae2864cb81c406c6f2fd3.png" src="../../_images/4b65c7b2e9b8bc61149a9958a4db7b072b49a2a3f65ae2864cb81c406c6f2fd3.png" />
 </div>
 </div>
 </section>
@@ -513,7 +513,7 @@ <h2>Abnormal Multi-lead ECG<a class="headerlink" href="#abnormal-multi-lead-ecg"
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/98087ffb8dde657e0361b107ec69b5e805257488a10ccf6cca2031598198c098.png" src="../../_images/98087ffb8dde657e0361b107ec69b5e805257488a10ccf6cca2031598198c098.png" />
+<img alt="../../_images/8b89b368588dc0b8ea842103089cfbb3f3bf619e9f42c5e910ddaf8fb15f1a6d.png" src="../../_images/8b89b368588dc0b8ea842103089cfbb3f3bf619e9f42c5e910ddaf8fb15f1a6d.png" />
 </div>
 </div>
 </section>

diff --git a/examples/ecg_heartbeats/ecg_heartbeats.html b/examples/ecg_heartbeats/ecg_heartbeats.html
@@ -520,7 +520,7 @@ <h2>Extract R-peaks location<a class="headerlink" href="#extract-r-peaks-locatio
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/5be9652f5bf08969e1111669f1d669a4325cb1be1710b8071209bd98cf5776c0.png" src="../../_images/5be9652f5bf08969e1111669f1d669a4325cb1be1710b8071209bd98cf5776c0.png" />
+<img alt="../../_images/d5cb6b8e8c435e8b11e50c0c1dd0b051931322da7359b536b9827f3e74383f53.png" src="../../_images/d5cb6b8e8c435e8b11e50c0c1dd0b051931322da7359b536b9827f3e74383f53.png" />
 </div>
 </div>
 <p>Once that we know where the R-peaks are located, we can create windows of signal around them (of a length of for instance 1 second, ranging from 400 ms before the R-peak), which we can refer to as <em>epochs</em>.</p>
@@ -536,7 +536,7 @@ <h2>Segment the signal around the heart beats<a class="headerlink" href="#segmen
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/4325a4d17df837a732b535f0e650f89f74931b29cd5b7922122356c837bbc893.png" src="../../_images/4325a4d17df837a732b535f0e650f89f74931b29cd5b7922122356c837bbc893.png" />
+<img alt="../../_images/3eee64bf8b9b1082d4b621b65374bcfd0afcaee3d10f332e1026953376134920.png" src="../../_images/3eee64bf8b9b1082d4b621b65374bcfd0afcaee3d10f332e1026953376134920.png" />
 </div>
 </div>
 <p>This create a dictionary of dataframes for each ‘epoch’ (in this case, each heart beat).</p>
@@ -592,36 +592,36 @@ <h3>Custom colors and legend<a class="headerlink" href="#custom-colors-and-legen
   <tbody>
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-      <td>-0.151484</td>
-      <td>139</td>
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       <td>-0.300000</td>
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+      <td>-0.182244</td>
+      <td>144</td>
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+      <td>-0.165040</td>
+      <td>147</td>
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   <tbody>
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-      <td>-0.104789</td>
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+      <td>-0.187719</td>
+      <td>-0.140571</td>
+      <td>-0.131736</td>
+      <td>-0.131385</td>
+      <td>-0.136717</td>
+      <td>-0.139724</td>
+      <td>-0.141696</td>
+      <td>-0.131507</td>
+      <td>-0.136750</td>
+      <td>-0.133452</td>
       <td>...</td>
-      <td>-0.101860</td>
-      <td>-0.123205</td>
-      <td>-0.033595</td>
-      <td>-0.221311</td>
-      <td>-0.088031</td>
-      <td>-0.103186</td>
-      <td>-0.091460</td>
-      <td>-0.092205</td>
-      <td>-0.104493</td>
-      <td>-0.098597</td>
+      <td>-0.136813</td>
+      <td>-0.145590</td>
+      <td>-0.093642</td>
+      <td>-0.185515</td>
+      <td>-0.117336</td>
+      <td>-0.157407</td>
+      <td>-0.147243</td>
+      <td>-0.128952</td>
+      <td>-0.133781</td>
+      <td>-0.147875</td>
     </tr>
     <tr>
       <th>-0.295977</th>
-      <td>-0.147354</td>
-      <td>-0.107203</td>
-      <td>-0.102385</td>
-      <td>-0.099048</td>
-      <td>-0.097742</td>
-      <td>-0.117630</td>
-      <td>-0.067741</td>
-      <td>-0.210511</td>
-      <td>-0.105166</td>
-      <td>-0.110710</td>
+      <td>-0.182244</td>
+      <td>-0.139497</td>
+      <td>-0.130869</td>
+      <td>-0.130196</td>
+      <td>-0.136053</td>
+      <td>-0.138738</td>
+      <td>-0.141083</td>
+      <td>-0.130751</td>
+      <td>-0.135663</td>
+      <td>-0.132369</td>
       <td>...</td>
-      <td>-0.101375</td>
-      <td>-0.122172</td>
-      <td>-0.033237</td>
-      <td>-0.221161</td>
-      <td>-0.087433</td>
-      <td>-0.102758</td>
-      <td>-0.091069</td>
-      <td>-0.091510</td>
-      <td>-0.103574</td>
-      <td>-0.097669</td>
+      <td>-0.136005</td>
+      <td>-0.144706</td>
+      <td>-0.092539</td>
+      <td>-0.185264</td>
+      <td>-0.116666</td>
+      <td>-0.157010</td>
+      <td>-0.146289</td>
+      <td>-0.128307</td>
+      <td>-0.132706</td>
+      <td>-0.146822</td>
     </tr>
     <tr>
       <th>-0.291954</th>
-      <td>-0.143149</td>
-      <td>-0.106934</td>
-      <td>-0.101498</td>
-      <td>-0.098047</td>
-      <td>-0.096770</td>
-      <td>-0.116356</td>
-      <td>-0.067051</td>
-      <td>-0.211361</td>
-      <td>-0.105380</td>
-      <td>-0.109656</td>
+      <td>-0.176678</td>
+      <td>-0.138229</td>
+      <td>-0.129933</td>
+      <td>-0.128915</td>
+      <td>-0.135266</td>
+      <td>-0.137524</td>
+      <td>-0.140340</td>
+      <td>-0.129912</td>
+      <td>-0.134400</td>
+      <td>-0.131094</td>
       <td>...</td>
-      <td>-0.100770</td>
-      <td>-0.120985</td>
-      <td>-0.032792</td>
-      <td>-0.220903</td>
-      <td>-0.086716</td>
-      <td>-0.102209</td>
-      <td>-0.090651</td>
-      <td>-0.090740</td>
-      <td>-0.102497</td>
-      <td>-0.096609</td>
+      <td>-0.135074</td>
+      <td>-0.143711</td>
+      <td>-0.091408</td>
+      <td>-0.184838</td>
+      <td>-0.115826</td>
+      <td>-0.156407</td>
+      <td>-0.145191</td>
+      <td>-0.127574</td>
+      <td>-0.131492</td>
+      <td>-0.145552</td>
     </tr>
     <tr>
       <th>-0.287931</th>
-      <td>-0.138818</td>
-      <td>-0.106529</td>
-      <td>-0.100481</td>
-      <td>-0.096884</td>
-      <td>-0.095618</td>
-      <td>-0.114982</td>
-      <td>-0.066274</td>
-      <td>-0.212114</td>
-      <td>-0.105387</td>
-      <td>-0.108438</td>
+      <td>-0.170968</td>
+      <td>-0.136730</td>
+      <td>-0.128879</td>
+      <td>-0.127510</td>
+      <td>-0.134288</td>
+      <td>-0.136047</td>
+      <td>-0.139424</td>
+      <td>-0.128965</td>
+      <td>-0.132931</td>
+      <td>-0.129571</td>
       <td>...</td>
-      <td>-0.100002</td>
-      <td>-0.119599</td>
-      <td>-0.032226</td>
-      <td>-0.220487</td>
-      <td>-0.085854</td>
-      <td>-0.101514</td>
-      <td>-0.090164</td>
-      <td>-0.089868</td>
-      <td>-0.101217</td>
-      <td>-0.095392</td>
+      <td>-0.133993</td>
+      <td>-0.142559</td>
+      <td>-0.090226</td>
+      <td>-0.184194</td>
+      <td>-0.114769</td>
+      <td>-0.155564</td>
+      <td>-0.143904</td>
+      <td>-0.126727</td>
+      <td>-0.130099</td>
+      <td>-0.144017</td>
     </tr>
     <tr>
       <th>-0.283908</th>
-      <td>-0.134298</td>
-      <td>-0.105946</td>
-      <td>-0.099277</td>
-      <td>-0.095502</td>
-      <td>-0.094241</td>
-      <td>-0.113473</td>
-      <td>-0.065393</td>
-      <td>-0.212732</td>
-      <td>-0.105135</td>
-      <td>-0.106996</td>
+      <td>-0.165040</td>
+      <td>-0.134957</td>
+      <td>-0.127642</td>
+      <td>-0.125934</td>
+      <td>-0.133027</td>
+      <td>-0.134261</td>
+      <td>-0.138271</td>
+      <td>-0.127876</td>
+      <td>-0.131218</td>
+      <td>-0.127715</td>
       <td>...</td>
-      <td>-0.099010</td>
-      <td>-0.117962</td>
-      <td>-0.031484</td>
-      <td>-0.219846</td>
-      <td>-0.084822</td>
-      <td>-0.100644</td>
-      <td>-0.089553</td>
-      <td>-0.088859</td>
-      <td>-0.099685</td>
-      <td>-0.093987</td>
+      <td>-0.132719</td>
+      <td>-0.141191</td>
+      <td>-0.088953</td>
+      <td>-0.183292</td>
+      <td>-0.113438</td>
+      <td>-0.154426</td>
+      <td>-0.142367</td>
+      <td>-0.125721</td>
+      <td>-0.128471</td>
+      <td>-0.142147</td>
     </tr>
   </tbody>
 </table>
@@ -850,7 +850,7 @@ <h3>Custom colors and legend<a class="headerlink" href="#custom-colors-and-legen
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/4281a2d1b832cee22fc0d2ae16bbca7343c2a4682cb05a1f5e7610e64d06a86c.png" src="../../_images/4281a2d1b832cee22fc0d2ae16bbca7343c2a4682cb05a1f5e7610e64d06a86c.png" />
+<img alt="../../_images/b7542d27cd37fab8dc81dda2416d55f7a7879d70718956e16d34b8fd372bfd01.png" src="../../_images/b7542d27cd37fab8dc81dda2416d55f7a7879d70718956e16d34b8fd372bfd01.png" />
 </div>
 </div>
 </section>