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241 Open 462 Closed
241 Open 462 Closed
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Issues list

Remove Python 3.8 support enhancement New feature or request
#1680 opened Nov 14, 2024 by corneliusroemer
Support Python 3.13 blocked Dependent on external development enhancement New feature or request
#1679 opened Nov 14, 2024 by corneliusroemer
Add internal changes to changelog to improve visibility for developers and give credit proposal Proposals that warrant further discussion
#1673 opened Nov 12, 2024 by corneliusroemer
4
Replace use of internal, non-public pandas API in parse.fix_dates
#1670 opened Nov 10, 2024 by corneliusroemer
2
parse: crash on invalid dates "0", "99999" instead of handling gracefully as intended bug Something isn't working
#1669 opened Nov 10, 2024 by corneliusroemer
Missing escape of square brackets causes diff_jsons.py in some cram tests to be false negative bug Something isn't working
#1665 opened Nov 9, 2024 by corneliusroemer
1
Layering Auspice config files enhancement New feature or request
#1663 opened Nov 8, 2024 by genehack
3
Validation regex pattern for branch_label display default values in Auspice config JSON is too strict bug Something isn't working
#1661 opened Nov 7, 2024 by huddlej
3
CLI help text can't contain rST section headings documentation Improvements or additions to documentation
#1657 opened Oct 23, 2024 by victorlin
Gff3 file: differences between nextclade datasets and augur ancestral documentation Improvements or additions to documentation
#1655 opened Oct 21, 2024 by anna-parker
3
Improve help text of CLI options that use extend and ExtendOverwriteDefault actions documentation Improvements or additions to documentation
#1654 opened Oct 17, 2024 by joverlee521
3
curate apply-geolocation-rules: Allow rule overrides enhancement New feature or request
#1648 opened Oct 3, 2024 by joverlee521
Add examples for weighted sampling with multiple columns including month/week documentation Improvements or additions to documentation
#1645 opened Sep 25, 2024 by victorlin
Also accept "region" as synonym of "source" for gb files? enhancement New feature or request
#1643 opened Sep 25, 2024 by corneliusroemer
1
Improve rendering of CLI documentation
#1642 opened Sep 24, 2024 by victorlin
7 tasks
CI/release: Run tests on build artifacts
#1638 opened Sep 23, 2024 by victorlin
Improve help text of CLI options
#1630 opened Sep 13, 2024 by victorlin
2 tasks
3
augur merge is slow to read in metadata enhancement New feature or request
#1628 opened Sep 10, 2024 by tsibley
2 tasks
Release: changelog can be out-of-sync bug Something isn't working
#1620 opened Sep 3, 2024 by victorlin
4
merge: Import metadata files concurrently? enhancement New feature or request
#1617 opened Sep 3, 2024 by tsibley
Align fractional sequences per group conversion methods proposal Proposals that warrant further discussion
#1614 opened Aug 29, 2024 by victorlin
@victorlin
Revise docs for v25 features to add versionadded directives
#1612 opened Aug 28, 2024 by genehack
Legacy editable installs are deprecated bug Something isn't working
#1611 opened Aug 28, 2024 by genehack
filter: Prefer "output sequences" over "output"? proposal Proposals that warrant further discussion
#1607 opened Aug 27, 2024 by victorlin
1
2
augur ancestral - IndexError when using wrong (shorter) reference bug Something isn't working
#1600 opened Aug 27, 2024 by ammaraziz
ProTip! Exclude everything labeled bug with -label:bug.