2.0.0 - Annie Easley

What's Changed

• Porting pipeline to DSL2 and to nf-core
• Add igenomes by @SusiJo in #48
• --cram_files parameter is deprecated as file type is automatically detected
• --index_files parameter is deprecated and if no index files are provided in the samplesheet, they will be generated
• --input changed to samplesheet and does not take paths to data anymore

New Contributors

• @nf-core-bot made their first contribution in #46

Full Changelog: 1.2.0...2.0.0