Fix problems with unpredictable failures

nf-core · Oct 1, 2023 · 06b4898 · 06b4898
1 parent a30d07a
commit 06b4898
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/conf/base.config b/conf/base.config
@@ -60,4 +60,14 @@ process {
     withName:CUSTOM_DUMPSOFTWAREVERSIONS {
         cache = false
     }
+    withName:HISAT2_ALIGN {
+        // Workaround: This step sometimes failes irreproduceably
+        errorStrategy = 'retry'
+        maxRetries    = 2
+    }
+    withName:CIRIQUANT {
+        // Workaround: This step sometimes failes irreproduceably
+        errorStrategy = 'retry'
+        maxRetries    = 2
+    }
 }