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Update modules
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@nictru
nictru committed Sep 27, 2023
1 parent 1347755 commit 91fe927
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62 changes: 31 additions & 31 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -7,137 +7,137 @@
"nf-core": {
"bowtie/align": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["modules"]
},
"bowtie/build": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bowtie2/align": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "fe54581f8bed20e4c4a51c616c93fd3379d89820",
"installed_by": ["modules"]
},
"bowtie2/build": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "6a24fbe314bb2e6fe6306c29a63076ea87e8eb3c",
"installed_by": ["modules"]
},
"bwa/index": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "bfed129da5134b4439b1821c917972570d44d39c",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
"installed_by": ["modules"]
},
"circexplorer2/annotate": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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},
"circexplorer2/parse": {
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},
"custom/dumpsoftwareversions": {
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"fastqc": {
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"miranda": {
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"multiqc": {
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"samtools/flagstat": {
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"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
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},
"samtools/stats": {
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"samtools/view": {
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"git_sha": "3ffae3598260a99e8db3207dead9f73f87f90d1f",
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},
"segemehl/align": {
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},
"segemehl/index": {
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"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"star/align": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "cc08a888069f67cab8120259bddab8032d4c0fe3",
"installed_by": ["modules"]
},
"star/genomegenerate": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "cc08a888069f67cab8120259bddab8032d4c0fe3",
"installed_by": ["modules"]
},
"stringtie/stringtie": {
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"trimgalore": {
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"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
}
}
Expand All @@ -146,12 +146,12 @@
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "3911652a6b24249358f79e8b8466338d63efb2a2",
"git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "92eb5091ae5368a60cda58b3a0ced8b36d715b0f",
"git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
"installed_by": ["bam_sort_stats_samtools"]
}
}
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2 changes: 1 addition & 1 deletion modules/nf-core/bowtie/align/main.nf
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2 changes: 1 addition & 1 deletion modules/nf-core/bowtie/build/main.nf
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35 changes: 29 additions & 6 deletions modules/nf-core/bowtie2/align/main.nf
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6 changes: 3 additions & 3 deletions modules/nf-core/bowtie2/align/meta.yml
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14 changes: 13 additions & 1 deletion modules/nf-core/bowtie2/build/main.nf
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18 changes: 10 additions & 8 deletions modules/nf-core/bwa/index/main.nf
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2 changes: 1 addition & 1 deletion modules/nf-core/cat/fastq/main.nf
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3 changes: 2 additions & 1 deletion modules/nf-core/cat/fastq/meta.yml
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2 changes: 1 addition & 1 deletion modules/nf-core/circexplorer2/annotate/main.nf
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2 changes: 1 addition & 1 deletion modules/nf-core/circexplorer2/parse/main.nf
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