Merge branch 'samshee_improvements' of https://github.com/nf-core/dem…

…ultiplex into samshee_improvements
nf-core · Aug 12, 2024 · 62f9850 · 62f9850
2 parents 9bb0b6b + f92dfec
commit 62f9850
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Showing 2 changed files with 24 additions and 24 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -232,7 +232,7 @@ process {
             mode: params.publish_dir_mode
         ]
     }
-
+// Samshee should fail the entire pipeline immediately as it validated the illumina samplesheet to be valid before the pipeline runs. As such, it should not be running more than once & if it fails should stop the pipeline
     withName: SAMSHEE {
         errorStrategy = "terminate"
     }

diff --git a/tests/pipeline/skip_tools.nf.test.snap b/tests/pipeline/skip_tools.nf.test.snap
@@ -7,7 +7,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-25T20:38:35.033660203"
+        "timestamp": "2024-08-12T17:10:00.298491082"
     },
     "skip_fastqc": {
         "content": [
@@ -31,9 +31,9 @@
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-07T15:11:46.12688"
+        "timestamp": "2024-08-12T17:13:45.68600951"
     },
     "skip_fastp": {
         "content": [
@@ -57,9 +57,9 @@
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-07T15:09:48.227109"
+        "timestamp": "2024-08-12T17:11:10.977146544"
     },
     "skip_multiqc": {
         "content": [
@@ -83,9 +83,9 @@
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-07T15:14:47.991287"
+        "timestamp": "2024-08-12T17:16:50.422490047"
     },
     "skip_fastp_fastqc": {
         "content": [
@@ -109,49 +109,49 @@
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-07T15:13:01.794999"
+        "timestamp": "2024-08-12T17:15:14.973440084"
     },
     "software_versions_skip_fastqc": {
         "content": [
             "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-07-25T20:40:12.591107775"
+        "timestamp": "2024-08-12T17:13:40.000621044"
     },
     "software_versions_skip_fastp_fastqc": {
         "content": [
             "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-07-25T20:40:52.373539308"
+        "timestamp": "2024-08-12T17:15:06.589630757"
     },
     "software_versions_skip_multiqc": {
         "content": [
             "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-07-25T20:41:53.704450617"
+        "timestamp": "2024-08-12T17:16:39.766616774"
     },
     "software_versions_skip_fastp": {
         "content": [
             "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-07-25T20:39:04.450501154"
+        "timestamp": "2024-08-12T17:11:08.013153743"
     },
     "skip_trimming": {
         "content": [
@@ -175,8 +175,8 @@
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-07T15:08:34.10467"
+        "timestamp": "2024-08-12T17:10:00.32545302"
     }
 }