Bump Release PR

nf-core · Aug 12, 2024 · c31a90d · c31a90d
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,9 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unpublished Version / DEV]
-
-## 1.5.0
+## 1.5.0 - 2024-08-12
 
 ### `Added`
 

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,8 +1,8 @@
 report_comment: >
 
-  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/tree/dev" target="_blank">nf-core/demultiplex</a>
+  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/releases/tag/1.5.0" target="_blank">nf-core/demultiplex</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/demultiplex/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/demultiplex/1.5.0/docs/output" target="_blank">documentation</a>.
 
 report_section_order:
   "nf-core-demultiplex-methods-description":

diff --git a/nextflow.config b/nextflow.config
@@ -275,7 +275,7 @@ manifest {
     description     = """Demultiplexing pipeline for Illumina sequencing data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.5.0dev'
+    version         = '1.5.0'
     doi             = '10.5281/zenodo.7153103'
 }
 

diff --git a/tests/pipeline/bases2fastq.nf.test.snap b/tests/pipeline/bases2fastq.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{BASES2FASTQ={bases2fastq=1.8.0.1260801529, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BASES2FASTQ={bases2fastq=1.8.0.1260801529, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -22,4 +22,4 @@
         },
         "timestamp": "2024-08-06T15:54:30.125104"
     }
-}
+}
diff --git a/tests/pipeline/bcl2fastq.nf.test.snap b/tests/pipeline/bcl2fastq.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -24,7 +24,7 @@
                                     "laneBarcode.html:md5,2bbdae3ee57151eab520c966597d7438"
                                 ],
                                 [
-                                    
+
                                 ]
                             ]
                         ],
@@ -45,7 +45,7 @@
                                     "laneBarcode.html:md5,48842c23b9a2816aec540177df870968"
                                 ],
                                 [
-                                    
+
                                 ]
                             ]
                         ]
@@ -82,4 +82,4 @@
         },
         "timestamp": "2024-08-08T20:43:42.016587995"
     }
-}
+}
diff --git a/tests/pipeline/bclconvert.nf.test.snap b/tests/pipeline/bclconvert.nf.test.snap
@@ -28,7 +28,7 @@
     },
     "software_versions": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.8.4",
@@ -48,4 +48,4 @@
         },
         "timestamp": "2024-08-01T14:51:11.574966834"
     }
-}
+}
diff --git a/tests/pipeline/fqtk.nf.test.snap b/tests/pipeline/fqtk.nf.test.snap
@@ -11,7 +11,7 @@
     },
     "software_versions": {
         "content": [
-            "{CSV2TSV={sed=4.8}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{CSV2TSV={sed=4.8}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",

diff --git a/tests/pipeline/kraken.nf.test.snap b/tests/pipeline/kraken.nf.test.snap
@@ -63,7 +63,7 @@
     },
     "software_versions": {
         "content": [
-            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, KRAKEN2={kraken2=2.1.3, pigz=2.8}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, KRAKEN2={kraken2=2.1.3, pigz=2.8}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",

diff --git a/tests/pipeline/mkfastq.nf.test.snap b/tests/pipeline/mkfastq.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{CELLRANGER_MKFASTQ={cellranger=8.0.0}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{CELLRANGER_MKFASTQ={cellranger=8.0.0}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",

diff --git a/tests/pipeline/sgdemux.nf.test.snap b/tests/pipeline/sgdemux.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",

diff --git a/tests/pipeline/skip_tools.nf.test.snap b/tests/pipeline/skip_tools.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions_skip_trimming": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -115,7 +115,7 @@
     },
     "software_versions_skip_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -125,7 +125,7 @@
     },
     "software_versions_skip_fastp_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -135,7 +135,7 @@
     },
     "software_versions_skip_multiqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",
@@ -145,7 +145,7 @@
     },
     "software_versions_skip_fastp": {
         "content": [
-            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",

diff --git a/tests/pipeline/test_pe.nf.test.snap b/tests/pipeline/test_pe.nf.test.snap
@@ -66,7 +66,7 @@
     },
     "software_versions": {
         "content": [
-            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
+            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0}}"
         ],
         "meta": {
             "nf-test": "0.9.0",