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update sgdemux
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@atrigila
atrigila committed Oct 18, 2024
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Showing 1 changed file with 183 additions and 4 deletions.
187 changes: 183 additions & 4 deletions tests/sgdemux.nf.test.snap
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"fastq/s7_S7_L001.samplesheet.csv",
"fastq/s8_S8_L001.samplesheet.csv",
"fastq/s9_S9_L001.samplesheet.csv",
"multiqc",
"multiqc/multiqc_data",
"multiqc/multiqc_data/fastp-seq-content-gc-plot_Read_1_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-gc-plot_Read_1_Before_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-gc-plot_Read_2_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-gc-plot_Read_2_Before_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-n-plot_Read_1_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-n-plot_Read_1_Before_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-n-plot_Read_2_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-content-n-plot_Read_2_Before_filtering.txt",
"multiqc/multiqc_data/fastp-seq-quality-plot_Read_1_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-quality-plot_Read_1_Before_filtering.txt",
"multiqc/multiqc_data/fastp-seq-quality-plot_Read_2_After_filtering.txt",
"multiqc/multiqc_data/fastp-seq-quality-plot_Read_2_Before_filtering.txt",
"multiqc/multiqc_data/fastp_filtered_reads_plot.txt",
"multiqc/multiqc_data/fastqc-1-status-check-heatmap.txt",
"multiqc/multiqc_data/fastqc-1_per_base_n_content_plot.txt",
"multiqc/multiqc_data/fastqc-1_per_base_sequence_quality_plot.txt",
"multiqc/multiqc_data/fastqc-1_per_sequence_gc_content_plot_Counts.txt",
"multiqc/multiqc_data/fastqc-1_per_sequence_gc_content_plot_Percentages.txt",
"multiqc/multiqc_data/fastqc-1_per_sequence_quality_scores_plot.txt",
"multiqc/multiqc_data/fastqc-1_sequence_counts_plot.txt",
"multiqc/multiqc_data/fastqc-1_sequence_duplication_levels_plot.txt",
"multiqc/multiqc_data/fastqc-1_top_overrepresented_sequences_table.txt",
"multiqc/multiqc_data/fastqc-2-status-check-heatmap.txt",
"multiqc/multiqc_data/fastqc-2_per_base_n_content_plot.txt",
"multiqc/multiqc_data/fastqc-2_per_base_sequence_quality_plot.txt",
"multiqc/multiqc_data/fastqc-2_per_sequence_gc_content_plot_Counts.txt",
"multiqc/multiqc_data/fastqc-2_per_sequence_gc_content_plot_Percentages.txt",
"multiqc/multiqc_data/fastqc-2_per_sequence_quality_scores_plot.txt",
"multiqc/multiqc_data/fastqc-2_sequence_counts_plot.txt",
"multiqc/multiqc_data/fastqc-2_sequence_duplication_levels_plot.txt",
"multiqc/multiqc_data/fastqc-2_top_overrepresented_sequences_table.txt",
"multiqc/multiqc_data/multiqc.log",
"multiqc/multiqc_data/multiqc_citations.txt",
"multiqc/multiqc_data/multiqc_data.json",
"multiqc/multiqc_data/multiqc_fastp.txt",
"multiqc/multiqc_data/multiqc_fastqc.txt",
"multiqc/multiqc_data/multiqc_fastqc_1.txt",
"multiqc/multiqc_data/multiqc_general_stats.txt",
"multiqc/multiqc_data/multiqc_software_versions.txt",
"multiqc/multiqc_data/multiqc_sources.txt",
"multiqc/multiqc_plots",
"multiqc/multiqc_plots/pdf",
"multiqc/multiqc_plots/pdf/fastp-seq-content-gc-plot_Read_1_After_filtering.pdf",
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"multiqc/multiqc_plots/pdf/fastqc-2-status-check-heatmap.pdf",
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"multiqc/multiqc_plots/pdf/fastqc-2_per_sequence_gc_content_plot_Percentages.pdf",
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"multiqc/multiqc_plots/pdf/fastqc-2_sequence_duplication_levels_plot.pdf",
"multiqc/multiqc_plots/pdf/fastqc-2_top_overrepresented_sequences_table.pdf",
"multiqc/multiqc_plots/pdf/general_stats_table.pdf",
"multiqc/multiqc_plots/png",
"multiqc/multiqc_plots/png/fastp-seq-content-gc-plot_Read_1_After_filtering.png",
"multiqc/multiqc_plots/png/fastp-seq-content-gc-plot_Read_1_Before_filtering.png",
"multiqc/multiqc_plots/png/fastp-seq-content-gc-plot_Read_2_After_filtering.png",
"multiqc/multiqc_plots/png/fastp-seq-content-gc-plot_Read_2_Before_filtering.png",
"multiqc/multiqc_plots/png/fastp-seq-content-n-plot_Read_1_After_filtering.png",
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"multiqc/multiqc_plots/png/fastp-seq-content-n-plot_Read_2_After_filtering.png",
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"multiqc/multiqc_plots/png/fastp-seq-quality-plot_Read_1_After_filtering.png",
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"multiqc/multiqc_plots/png/fastqc-1_per_sequence_quality_scores_plot.png",
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"multiqc/multiqc_plots/png/fastqc-1_sequence_duplication_levels_plot.png",
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"multiqc/multiqc_plots/png/fastqc-2_per_sequence_quality_scores_plot.png",
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"multiqc/multiqc_plots/png/fastqc-2_sequence_counts_plot-pct.png",
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"multiqc/multiqc_plots/png/fastqc-2_top_overrepresented_sequences_table.png",
"multiqc/multiqc_plots/png/general_stats_table.png",
"multiqc/multiqc_plots/svg",
"multiqc/multiqc_plots/svg/fastp-seq-content-gc-plot_Read_1_After_filtering.svg",
"multiqc/multiqc_plots/svg/fastp-seq-content-gc-plot_Read_1_Before_filtering.svg",
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"multiqc/multiqc_plots/svg/fastp-seq-content-gc-plot_Read_2_Before_filtering.svg",
"multiqc/multiqc_plots/svg/fastp-seq-content-n-plot_Read_1_After_filtering.svg",
"multiqc/multiqc_plots/svg/fastp-seq-content-n-plot_Read_1_Before_filtering.svg",
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"multiqc/multiqc_plots/svg/fastp-seq-quality-plot_Read_2_Before_filtering.svg",
"multiqc/multiqc_plots/svg/fastp_filtered_reads_plot-cnt.svg",
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"multiqc/multiqc_plots/svg/fastqc-1-status-check-heatmap.svg",
"multiqc/multiqc_plots/svg/fastqc-1_per_base_n_content_plot.svg",
"multiqc/multiqc_plots/svg/fastqc-1_per_base_sequence_quality_plot.svg",
"multiqc/multiqc_plots/svg/fastqc-1_per_sequence_gc_content_plot_Counts.svg",
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"multiqc/multiqc_plots/svg/fastqc-1_sequence_duplication_levels_plot.svg",
"multiqc/multiqc_plots/svg/fastqc-1_top_overrepresented_sequences_table.svg",
"multiqc/multiqc_plots/svg/fastqc-2-status-check-heatmap.svg",
"multiqc/multiqc_plots/svg/fastqc-2_per_base_n_content_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc-2_top_overrepresented_sequences_table.svg",
"multiqc/multiqc_plots/svg/general_stats_table.svg",
"multiqc/multiqc_report.html",
"pipeline_info",
"pipeline_info/nf_core_pipeline_software_mqc_versions.yml",
"samplesheet",
Expand Down Expand Up @@ -364,9 +516,36 @@
"sim-data/sample_barcode_hop_metrics.tsv"
],
[
"atacseq_samplesheet.csv:md5,06f0b7297e6dbf8c36ff5c1bdee557bb",
"rnaseq_samplesheet.csv:md5,135d17fff6382bea7b5ec71e7252df1e",
"taxprofiler_samplesheet.csv:md5,54f51c0d30b0245e3f7b45445ac70c44",
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"Undetermined_S25_L001.fastp.json:md5,577922aa75bb6ab549ed7699ae45becc",
"metrics.tsv:md5,7627e4bd2a56ea551fd74b4a2b5cb4b2",
Expand Down Expand Up @@ -403,6 +582,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-17T19:04:04.078111423"
"timestamp": "2024-10-18T00:54:45.989490742"
}
}

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