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Update resources in fqtk and snaps
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@nschcolnicov
nschcolnicov committed Oct 18, 2024
1 parent 1d42766 commit f6186af
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Showing 3 changed files with 35 additions and 35 deletions.
4 changes: 2 additions & 2 deletions conf/test_fqtk.config
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Expand Up @@ -13,8 +13,8 @@
// Limit resources so that this can run on GitHub Actions
process {
resourceLimits = [
cpus: 4,
memory: '13.GB',
cpus: 2,
memory: '6.GB',
time: '4.h'
]
}
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14 changes: 7 additions & 7 deletions tests/bclconvert_mini.nf.test.snap
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Expand Up @@ -255,19 +255,19 @@
[
"HBRR1_S1_L001.fastp.fastq.gz:md5,451657490d4816dd5ff904e34ecc7fdf",
"HBRR1_S1_L001.fastp.fastq.gz.md5:md5,573455dfd3f2e7fa6b1eee838659c03a",
"HBRR1_S1_L001.fastp.json:md5,d34d8a4237b3ff4585f5b3fc84172d02",
"HBRR1_S1_L001.fastp.json:md5,abc74d1b3abc74dc86893508598083bf",
"HBRR1_S1_L001_R1_001.fastq.gz:md5,451657490d4816dd5ff904e34ecc7fdf",
"HBRR1_S1_L001_fastqc_data.txt:md5,e3ef09af2b44d86b7b32494f1ce5fc4c",
"HBRR1_S1_L001_summary.txt:md5,53a5e6bac1e853f23d27d6966e52df81",
"HBRR2_S2_L001.fastp.fastq.gz:md5,3b9e4fc70ebc608b48d1f0027265e9b8",
"HBRR2_S2_L001.fastp.fastq.gz.md5:md5,50fbb4ab07c7641277f2f7352babe4bd",
"HBRR2_S2_L001.fastp.json:md5,f0ff03f6bf6c1a3878ae2eebba0f070d",
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"HBRR2_S2_L001_fastqc_data.txt:md5,1c5127f5835c98503af2c7fa98da2982",
"HBRR2_S2_L001_summary.txt:md5,f3e0bc27d30d0f6e10ad76be47017881",
"HBRR3_S3_L001.fastp.fastq.gz:md5,a110eefaee1da4d99398500e55919f0c",
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"HBRR3_S3_L001.fastp.json:md5,c2abb3a7d3e46392cad6b0230d744ac2",
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"HBRR3_S3_L001_summary.txt:md5,fbe9c4281a768a826429e328f5eb2a34",
Expand Down Expand Up @@ -300,19 +300,19 @@
"fastq_list.csv:md5,07cbe4173e18cbdef16ee8feb4adaf7d",
"UHRR1_S4_L001.fastp.fastq.gz:md5,03f215bcb4005804f60acccfe4aaef78",
"UHRR1_S4_L001.fastp.fastq.gz.md5:md5,baa87b03873661fc6c7f318e4b19de55",
"UHRR1_S4_L001.fastp.json:md5,6b50a023754acafdd32c2bb103650a83",
"UHRR1_S4_L001.fastp.json:md5,aaa12ce4b53c4702045a973c73b2baea",
"UHRR1_S4_L001_R1_001.fastq.gz:md5,b470c82d2002c563c42786060ae364b9",
"UHRR1_S4_L001_fastqc_data.txt:md5,be145fdf6b50140c98d7590d85e891f2",
"UHRR1_S4_L001_summary.txt:md5,c6c342cbcad3fc68343284c24e4a8b4a",
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"UHRR2_S5_L001_fastqc_data.txt:md5,da424cfd66107dc895705fbdd5e7c94b",
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"UHRR3_S6_L001.fastp.json:md5,1e08e9fa69ad134ef69dc11cbbfd03ef",
"UHRR3_S6_L001.fastp.json:md5,d5d4fd8b4845ff8f8f94ec02147d92cd",
"UHRR3_S6_L001_R1_001.fastq.gz:md5,bdb407e3ded3691479ec25f5f1df3b07",
"UHRR3_S6_L001_fastqc_data.txt:md5,8cf45b23b2176f83309b2bd6162adb0d",
"UHRR3_S6_L001_summary.txt:md5,d7d5a014b51d64e4da1a113a4ad79eda",
Expand Down Expand Up @@ -350,6 +350,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-17T23:34:50.670465424"
"timestamp": "2024-10-18T14:18:52.915906491"
}
}
52 changes: 26 additions & 26 deletions tests/fqtk.nf.test.snap
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Expand Up @@ -501,8 +501,8 @@
"multiqc_citations.txt:md5,d35df50e9903a96a2b3bce3c1fbc8ad2",
"test.csv:md5,c01a880241575a67e3eb5dc461a4972c",
"demux-metrics.txt:md5,1d587fa959f9129155314cf531103347",
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"s10_1.fastp.fastq.gz_fastqc_data.txt:md5,f4877a6030408f6602010f135bd00199",
Expand All @@ -511,7 +511,7 @@
"s10_2.fastp.fastq.gz.md5:md5,5cbb47118bc5c1fec6b6e08a1f1c30a6",
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"s11_1.fastp.fastq.gz_fastqc_data.txt:md5,71a1bb83be438792b01c87e4625c7ff9",
Expand All @@ -520,7 +520,7 @@
"s11_2.fastp.fastq.gz.md5:md5,93334c959bd78786b274cc05db184e14",
"s11_2.fastp.fastq.gz_fastqc_data.txt:md5,427934d28e9bc0987889cafc3d58647d",
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Expand All @@ -529,7 +529,7 @@
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Expand All @@ -538,7 +538,7 @@
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"s14_1.fastp.fastq.gz_fastqc_data.txt:md5,dad59184d517f9b9b746d58d993fb2e6",
Expand All @@ -547,7 +547,7 @@
"s14_2.fastp.fastq.gz.md5:md5,8331df306ee370dc1eab5333f9f984b5",
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"s15_1.fastp.fastq.gz_fastqc_data.txt:md5,f350de6b6b415bfa779c1347dfc6e6cf",
Expand All @@ -556,7 +556,7 @@
"s15_2.fastp.fastq.gz.md5:md5,eac53af81c90e12babd1868ba63250d7",
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"s16_1.fastp.fastq.gz_fastqc_data.txt:md5,2ad150c1a32babb0f3fda90609923b2f",
Expand All @@ -565,7 +565,7 @@
"s16_2.fastp.fastq.gz.md5:md5,1edbe71af9b9461671c8b6a88e8c1b2d",
"s16_2.fastp.fastq.gz_fastqc_data.txt:md5,6e67cf4be9cbb06fa589ffb2a252eba2",
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Expand All @@ -574,7 +574,7 @@
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"s17_2.fastp.fastq.gz_fastqc_data.txt:md5,d5c62b1c0d48ca2d5b66187294574bee",
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Expand All @@ -583,7 +583,7 @@
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Expand All @@ -600,8 +600,8 @@
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Expand All @@ -610,7 +610,7 @@
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Expand All @@ -619,7 +619,7 @@
"s21_2.fastp.fastq.gz.md5:md5,bb1d568adb5761fbe58e7042753f7e6b",
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Expand All @@ -628,7 +628,7 @@
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Expand All @@ -637,7 +637,7 @@
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Expand All @@ -654,7 +654,7 @@
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Expand All @@ -663,7 +663,7 @@
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"s4_1.fastp.fastq.gz.md5:md5,a51cb41091933d7ea537e4eca66ee583",
"s4_1.fastp.fastq.gz_fastqc_data.txt:md5,c827cb223cd18868e986114b2b56aa11",
Expand All @@ -672,7 +672,7 @@
"s4_2.fastp.fastq.gz.md5:md5,5913f5cf971d04484e0473fc03e78a31",
"s4_2.fastp.fastq.gz_fastqc_data.txt:md5,c062a41b9578769e063655ee0410179d",
"s4_2.fastp.fastq.gz_summary.txt:md5,61f3820bf97c6b358d9e039266ac7691",
"s5.fastp.json:md5,8826756e18132471c33d5d0ba3f6b17f",
"s5.fastp.json:md5,28952d9bb6d072318a78c1439660bceb",
"s5_1.fastp.fastq.gz:md5,2c111ddbdc64a9f4a9fc7a27f2e2aaea",
"s5_1.fastp.fastq.gz.md5:md5,7fffdc9a1785f132cf56800a269aa20d",
"s5_1.fastp.fastq.gz_fastqc_data.txt:md5,c54f90f7b4623bd3bdfe8580b277af0b",
Expand All @@ -681,7 +681,7 @@
"s5_2.fastp.fastq.gz.md5:md5,bb1dfb34b2cfb26b5dbef8493eb4fdfe",
"s5_2.fastp.fastq.gz_fastqc_data.txt:md5,9df4fa82eb11393fb57d7c029c7ae327",
"s5_2.fastp.fastq.gz_summary.txt:md5,2fe1f212327441aa271f7f308270f3d2",
"s6.fastp.json:md5,6a0c0339fed4eb4f7e5780b7fef079d2",
"s6.fastp.json:md5,d22a7952ea95966f4e63d44ee3f70cb4",
"s6_1.fastp.fastq.gz:md5,cc6c0fb00166827307c846c8e9661c47",
"s6_1.fastp.fastq.gz.md5:md5,81910b3afe48abf930d7623f94adf9f6",
"s6_1.fastp.fastq.gz_fastqc_data.txt:md5,f6dcd4caa543e6b9bd7f683c50d09a84",
Expand All @@ -690,7 +690,7 @@
"s6_2.fastp.fastq.gz.md5:md5,2417e2f3c914fa8f032afd8676b2d43d",
"s6_2.fastp.fastq.gz_fastqc_data.txt:md5,a0cfd6e5c6d000b54798aa7967b654d5",
"s6_2.fastp.fastq.gz_summary.txt:md5,1afa3915b57e51d56eb998af0c2121a8",
"s7.fastp.json:md5,19d4c1d93cfddfe31c5be76dc0e1b50a",
"s7.fastp.json:md5,b8f8eb1085302a6d400b14237c396f46",
"s7_1.fastp.fastq.gz:md5,36ab856e02e7d1c17c3a122ec9179cbb",
"s7_1.fastp.fastq.gz.md5:md5,6942c45c37a57407853cfcbef1a7576e",
"s7_1.fastp.fastq.gz_fastqc_data.txt:md5,a8f1a1249da32dc1bafe64ef11ff333e",
Expand All @@ -699,7 +699,7 @@
"s7_2.fastp.fastq.gz.md5:md5,08bbbd69fc3ee7df14b33947f3265790",
"s7_2.fastp.fastq.gz_fastqc_data.txt:md5,4eda9a3f2a829184adbb61fcea58f6b4",
"s7_2.fastp.fastq.gz_summary.txt:md5,5d47846f21b5fe4e8b05cdd054f6a91b",
"s8.fastp.json:md5,bad705ea8bbd9957d3a1bb831b2966c2",
"s8.fastp.json:md5,d0597ec3bb6a01cbee52eebd3dd3acbc",
"s8_1.fastp.fastq.gz:md5,f37f97582eafb96aae79a1d635e4585e",
"s8_1.fastp.fastq.gz.md5:md5,530292bf972cf1b4b234fc40ae40e402",
"s8_1.fastp.fastq.gz_fastqc_data.txt:md5,9769a7bce94f65c7eb7d0a64f00607b5",
Expand All @@ -708,7 +708,7 @@
"s8_2.fastp.fastq.gz.md5:md5,ec862cc5d2cc18be996a8a38b4052d87",
"s8_2.fastp.fastq.gz_fastqc_data.txt:md5,065d4208b7d2c0162b71e47a673b6cd7",
"s8_2.fastp.fastq.gz_summary.txt:md5,821bbcf71f1e5e568aee2e8ac5788305",
"s9.fastp.json:md5,a961c9be7ef88ae4bc188809d6383842",
"s9.fastp.json:md5,630b637479e196307ac926354745b809",
"s9_1.fastp.fastq.gz:md5,42e79f8a4e8db043b76782538982d1ea",
"s9_1.fastp.fastq.gz.md5:md5,9ba7d8112363ed1de4e542e458ad02fa",
"s9_1.fastp.fastq.gz_fastqc_data.txt:md5,861216d8769fcf246198ce71e550c50d",
Expand All @@ -717,7 +717,7 @@
"s9_2.fastp.fastq.gz.md5:md5,35b322363f80b060c3c79b6d21448661",
"s9_2.fastp.fastq.gz_fastqc_data.txt:md5,44ac3768c508a14eea3756ed88271d96",
"s9_2.fastp.fastq.gz_summary.txt:md5,d6c912c1a073a7b0df9c1c3e00b1b814",
"unmatched.fastp.json:md5,4f4f375bc6fef5880d843df77ae2d5f1",
"unmatched.fastp.json:md5,81ad3c760b7d6c837888c9a0b34ac658",
"unmatched_1.fastp.fastq.gz:md5,8f77e8d5adc4b16dd499fe3bd092f66d",
"unmatched_1.fastp.fastq.gz.md5:md5,5b5876132b859c7dc6558bc63b24f8bf",
"unmatched_1.fastp.fastq.gz_fastqc_data.txt:md5,03d2a927a8850e90f4401c5e7cb469ec",
Expand All @@ -732,6 +732,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-17T23:37:31.252912431"
"timestamp": "2024-10-18T14:21:21.079435127"
}
}

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