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Release PR 1.5.0 #242

Merged
merged 300 commits into from
Aug 13, 2024
Merged

Release PR 1.5.0 #242

merged 300 commits into from
Aug 13, 2024
+10,022 −2,413
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jul 17, 2024

  1. Fixed editorconfig issues

    @nschcolnicov
    nschcolnicov committed Jul 17, 2024
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  2. feat: update bcl_demultiplex subworkflow

    @k1sauce
    k1sauce committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. test: update snaps for new versions

    [email protected] committed Jul 18, 2024
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  2. fix schema format path

    @atrigila
    atrigila committed Jul 18, 2024
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  3. Merge pull request #205 from atrigila/fix_path_schema 

    fix schema format path
    @atrigila
    atrigila authored Jul 18, 2024
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Commits on Jul 19, 2024

  1. Updated main.nf.test and snap

    zxBIB Schcolnicov committed Jul 19, 2024
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  2. Merge branch 'add_demultiplexing_subworkflow_10x' of https://github.c… 

    …om/nschcolnicov/demultiplex into add_demultiplexing_subworkflow_10x
    zxBIB Schcolnicov committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. update changelog

    @atrigila
    atrigila committed Jul 22, 2024
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  2. Merge pull request #206 from atrigila/test_uncompress 

    Add test with uncompressed data
    @atrigila
    atrigila authored Jul 22, 2024
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  3. Added CI test for mkfastq:

    zxBIB Schcolnicov committed Jul 22, 2024
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  4. Pulled from dev

    zxBIB Schcolnicov committed Jul 22, 2024
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  5. Installed mkfastq from modules for CI test

    @nschcolnicov
    nschcolnicov committed Jul 22, 2024
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  6. Re-added removed test profile during merge, updated mkfastq test reso… 

    …urces for CI
    @nschcolnicov
    nschcolnicov committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. add checkqc module

    @atrigila
    atrigila committed Jul 23, 2024
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  2. Added adapter removal

    zxBIB Schcolnicov committed Jul 23, 2024
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  3. Updated conditional statement and nextflow_schema

    zxBIB Schcolnicov committed Jul 23, 2024
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  4. Updated snaps and changelog

    zxBIB Schcolnicov committed Jul 23, 2024
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  5. Ran pre-commun

    @nschcolnicov
    nschcolnicov committed Jul 23, 2024
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  6. add config checkqc

    @atrigila
    atrigila committed Jul 23, 2024
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  7. create temp dir for testing checkqc

    @atrigila
    atrigila committed Jul 23, 2024
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  8. add checkqc config

    @atrigila
    atrigila committed Jul 23, 2024
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  9. Updated CI test and mkfastq nf-test and snap

    @nschcolnicov
    nschcolnicov committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Gregor Sturm <[email protected]>
    @nschcolnicov @grst
    nschcolnicov and grst authored Jul 24, 2024
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  2. Merge pull request #208 from nschcolnicov/remove_trimming 

    Add feature for adapter removal in illumina samplesheet, to avoid automatic trimming during demultiplexing by bcl conversion tools.
    @nschcolnicov
    nschcolnicov authored Jul 24, 2024
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  3. add checkqc module config

    @atrigila
    atrigila committed Jul 24, 2024
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  4. add condition to run checkqc

    @atrigila
    atrigila committed Jul 24, 2024
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  5. add checkqc config as param

    @atrigila
    atrigila committed Jul 24, 2024
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  6. update checkqc test

    @atrigila
    atrigila committed Jul 24, 2024
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  7. update modules config

    @atrigila
    atrigila committed Jul 24, 2024
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  8. skip checkqc if required

    @atrigila
    atrigila committed Jul 24, 2024
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  9. move default checkqc config to test_checkqc

    @atrigila
    atrigila committed Jul 24, 2024
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  10. test

    @atrigila
    atrigila committed Jul 24, 2024
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  11. polish checkqc test config

    @atrigila
    atrigila committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/demultiplex into add… 

    …_demultiplexing_subworkflow_10x
    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  2. Pulled from dev and removed mkfastq from CI tests

    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  3. Merge pull request #202 from nschcolnicov/add_demultiplexing_subworkf… 

    …low_10x

Add demultiplexing subworkflow 10x
    @nschcolnicov
    nschcolnicov authored Jul 25, 2024
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  4. Add additional arguments to mkfastq to test CI

    zxBIB Schcolnicov committed Jul 25, 2024
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  5. Add mkfastq to CI tests

    zxBIB Schcolnicov committed Jul 25, 2024
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  6. Update output.md:

    zxBIB Schcolnicov committed Jul 25, 2024
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  7. Synced mkfastq with modules repo, updated changelog

    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  8. code refactoring and re-structure

    @atrigila
    atrigila committed Jul 25, 2024
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  9. Merge pull request #212 from nschcolnicov/fix_ci_mkfastq 

    Add additional arguments to mkfastq to test CI
    @nschcolnicov
    nschcolnicov authored Jul 25, 2024
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  10. Merge branch 'dev' of https://github.com/nf-core/demultiplex into add… 

    …_trimming_docs
    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  11. Added section dedicated to trimming

    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  12. remove resources limit

    @atrigila
    atrigila committed Jul 25, 2024
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  13. remove symlinks from copy

    @atrigila
    atrigila committed Jul 25, 2024
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  14. create subw similar to bcl_demux

    @atrigila
    atrigila committed Jul 25, 2024
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  15. export checkqc dir from bcl2fastq

    @atrigila
    atrigila committed Jul 25, 2024
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  16. add subw to main workflow

    @atrigila
    atrigila committed Jul 25, 2024
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  17. fix typo

    @atrigila
    atrigila committed Jul 25, 2024
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  18. run only if demultiplexer is bcl2fastq

    @atrigila
    atrigila committed Jul 25, 2024
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  19. back to original structure

    @atrigila
    atrigila committed Jul 25, 2024
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  20. update docs

    @atrigila
    atrigila committed Jul 25, 2024
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  21. Merge branch 'dev' into add_checkqc_2

    @atrigila
    atrigila authored Jul 25, 2024
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  22. fix linting

    @atrigila
    atrigila committed Jul 25, 2024
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  23. update bcl2fastq

    @atrigila
    atrigila committed Jul 25, 2024
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  24. update bcl_demultiplex

    @atrigila
    atrigila committed Jul 25, 2024
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  25. fix pre-commit

    @atrigila
    atrigila committed Jul 25, 2024
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  26. Updated snaps

    @nschcolnicov
    nschcolnicov committed Jul 25, 2024
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  27. remove unused module

    @atrigila
    atrigila committed Jul 25, 2024
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  28. update changelog

    @atrigila
    atrigila committed Jul 25, 2024
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  29. fix precommit

    @atrigila
    atrigila committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. Update docs/usage.md

    @apeltzer
    apeltzer authored Jul 26, 2024
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  2. Merge pull request #213 from nschcolnicov/add_trimming_docs 

    Add trimming docs
    @nschcolnicov
    nschcolnicov authored Jul 26, 2024
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Commits on Jul 29, 2024

  1. update checkqc to v4.0.3

    @atrigila
    atrigila committed Jul 29, 2024
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  2. update tests to skip checkqc in bcl2fastq

    @atrigila
    atrigila committed Jul 29, 2024
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  3. apply suggestions from code review

    @atrigila
    atrigila committed Jul 29, 2024
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  4. update snapshot

    @atrigila
    atrigila committed Jul 29, 2024
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  5. Merge pull request #210 from atrigila/add_checkqc_2 

    Add option to run checkqc
    @atrigila
    atrigila authored Jul 29, 2024
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Commits on Jul 30, 2024

  1. Remove adapter lines entirely from samplesheet

    @grst
    grst authored Jul 30, 2024
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  2. Update demultiplex.nf

    @grst
    grst authored Jul 30, 2024
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  3. Update demultiplex.nf 

    Also remove AdapterRead1 which is an alias to Adapter
    @grst
    grst authored Jul 30, 2024
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  4. Use file()

    @grst
    grst committed Jul 30, 2024
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  5. Revert "Use file()" 

    This reverts commit c6bd23a.
    @grst
    grst committed Jul 30, 2024
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  6. simplify regex

    @grst
    grst committed Jul 30, 2024
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  7. Be more specific in regex

    @grst
    grst committed Jul 30, 2024
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  8. Updated CHANGELOG and pulled from dev

    @nschcolnicov
    nschcolnicov committed Jul 30, 2024
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  9. Fixed issue with CHANGELOG

    @nschcolnicov
    nschcolnicov committed Jul 30, 2024
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  10. Remove unused variable

    @grst
    grst committed Jul 30, 2024
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  11. Merge pull request #204 from k1sauce/bcl_demultiplex 

    Update to latest bcl_demultiplex sub workflow
    @nschcolnicov
    nschcolnicov authored Jul 30, 2024
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  12. add checkqc multiqc files

    @atrigila
    atrigila committed Jul 30, 2024
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  13. test separate by reads

    @atrigila
    atrigila committed Jul 30, 2024
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  14. Updated method for removing adapters

    @nschcolnicov
    nschcolnicov committed Jul 30, 2024
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  15. Pulled from dev

    @nschcolnicov
    nschcolnicov committed Jul 30, 2024
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  16. update multiqc config

    @atrigila
    atrigila committed Jul 30, 2024
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  17. run all modules

    @atrigila
    atrigila committed Jul 30, 2024
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  18. update changelog

    @atrigila
    atrigila committed Jul 30, 2024
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  19. Merge branch 'dev' into multiqc_fastq

    @atrigila
    atrigila authored Jul 30, 2024
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Commits on Jul 31, 2024

  1. Merge pull request #216 from atrigila/multiqc_fastq 

    Update multiqc config
    @apeltzer
    apeltzer authored Jul 31, 2024
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  2. Merge branch 'dev' into grst-patch-2

    @apeltzer
    apeltzer authored Jul 31, 2024
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  3. Added test_pe profile

    @nschcolnicov
    nschcolnicov committed Jul 31, 2024
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  4. update untar module

    @atrigila
    atrigila committed Jul 31, 2024
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  5. update dumpsoftwareversions module

    @atrigila
    atrigila committed Jul 31, 2024
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  6. update fastqc module

    @atrigila
    atrigila committed Jul 31, 2024
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  7. update fastqc module

    @atrigila
    atrigila committed Jul 31, 2024
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  8. update fqtk module

    @atrigila
    atrigila committed Jul 31, 2024
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  9. update fastp module

    @atrigila
    atrigila committed Jul 31, 2024
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  10. update bases2fastq

    @atrigila
    atrigila committed Jul 31, 2024
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  11. update modules json

    @atrigila
    atrigila committed Jul 31, 2024
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  12. update multiqc module

    @atrigila
    atrigila committed Jul 31, 2024
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  13. update md5sum module

    @atrigila
    atrigila committed Jul 31, 2024
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  14. Merge pull request #214 from nf-core/grst-patch-2 

    Remove adapter lines entirely from samplesheet
    @apeltzer
    apeltzer authored Jul 31, 2024
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  15. update snapshots

    @atrigila
    atrigila committed Jul 31, 2024
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Commits on Aug 1, 2024

  1. update mkfastq snapshot

    @atrigila
    atrigila committed Aug 1, 2024
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  2. update sgdemux snapshot

    @atrigila
    atrigila committed Aug 1, 2024
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  3. uncomment dumps

    @atrigila
    atrigila committed Aug 1, 2024
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  4. add other modules to multiqc

    @atrigila
    atrigila committed Aug 1, 2024
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  5. update bcl2fastq test

    @atrigila
    atrigila committed Aug 1, 2024
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  6. update bclconvert test

    @atrigila
    atrigila committed Aug 1, 2024
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  7. Samplesheet 2 outputdir

    zxBIB Schcolnicov committed Aug 1, 2024
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  8. Updated changelog with PR number

    zxBIB Schcolnicov committed Aug 1, 2024
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  9. update sgdemux snapshot

    @atrigila
    atrigila committed Aug 1, 2024
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  10. update bases2fastq test

    @atrigila
    atrigila committed Aug 1, 2024
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  11. Merge dev

    @atrigila
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  12. update test_pe test

    @atrigila
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  13. Merge branch 'dev' into template_update

    @atrigila
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  14. update changelog

    @atrigila
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  15. Pulled from dev

    zxBIB Schcolnicov committed Aug 1, 2024
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  16. Updated modules and subworkflows to latest version

    zxBIB Schcolnicov committed Aug 1, 2024
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  17. Merge pull request #217 from atrigila/template_update 

    Update modules
    @apeltzer
    apeltzer authored Aug 1, 2024
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  18. Merge branch 'dev' into samplesheed_to_outputdir

    @apeltzer
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  19. Merge pull request #219 from nschcolnicov/samplesheed_to_outputdir 

    Make samplesheet be published in outputdir
    @apeltzer
    apeltzer authored Aug 1, 2024
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  20. Added test profile and CI test, minor fixes

    zxBIB Schcolnicov committed Aug 1, 2024
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  21. Updated docs, and changelog

    zxBIB Schcolnicov committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. add missing params to schema

    @atrigila
    atrigila committed Aug 2, 2024
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  2. update changelog

    @atrigila
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  3. update docs

    @atrigila
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  4. Minor changes & Updated test profile

    zxBIB Schcolnicov committed Aug 2, 2024
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  5. Merge pull request #221 from atrigila/nf_validation 

    add missing params to schema
    @atrigila
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  6. Pulled from dev

    zxBIB Schcolnicov committed Aug 2, 2024
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  7. Ran pre-commit

    Nicolas Schcolnicov committed Aug 2, 2024
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  8. Fixed nf-tests:

    zxBIB Schcolnicov committed Aug 2, 2024
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  9. Fixed bast2fastq nftest:

    zxBIB Schcolnicov committed Aug 2, 2024
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Commits on Aug 5, 2024

  1. Updated schema

    zxBIB Schcolnicov committed Aug 5, 2024
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  2. Updated nextflow.config

    zxBIB Schcolnicov committed Aug 5, 2024
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  3. Updated kraken snap

    zxBIB Schcolnicov committed Aug 5, 2024
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  4. update modules

    @atrigila
    atrigila committed Aug 5, 2024
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  5. Fixed issues for multi-lane samples, added multi-lane test profile

    zxBIB Schcolnicov committed Aug 5, 2024
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  6. Merge branch 'add_kraken_step_aratz' of https://github.com/nschcolnic… 

    …ov/demultiplex into add_sample_two_lanes
    zxBIB Schcolnicov committed Aug 5, 2024
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  7. Pulled from kraken branch, updated CHANGELOG, and input for new test … 

    …profile
    zxBIB Schcolnicov committed Aug 5, 2024
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  8. Fixed pre-commit issues

    Nicolas Schcolnicov committed Aug 5, 2024
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  9. Fixed kraken test, improved join

    zxBIB Schcolnicov committed Aug 5, 2024
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  10. Fix merge issues

    zxBIB Schcolnicov committed Aug 5, 2024
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  11. pre-commit

    Nicolas Schcolnicov committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. change output pattern

    @atrigila
    atrigila committed Aug 6, 2024
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  2. remove reports and stats from nf-test

    @atrigila
    atrigila committed Aug 6, 2024
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  3. update snapshots

    @atrigila
    atrigila committed Aug 6, 2024
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  4. update snapshot

    @atrigila
    atrigila committed Aug 6, 2024
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  5. update nf-test version

    @atrigila
    atrigila committed Aug 6, 2024
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  6. remove commas

    @atrigila
    atrigila committed Aug 6, 2024
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  7. use conda to install nf-test

    @nvnieuwk
    nvnieuwk authored Aug 6, 2024
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  8. typo

    @nvnieuwk
    nvnieuwk authored Aug 6, 2024
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  9. Use conda nf-test

    @nvnieuwk
    nvnieuwk authored Aug 6, 2024
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  10. change ci to latest-stable

    @atrigila
    atrigila committed Aug 6, 2024
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  11. update snapshots

    @atrigila
    atrigila committed Aug 6, 2024
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  12. Merge pull request #224 from atrigila/issue_106 

    update modules
    @atrigila
    atrigila authored Aug 6, 2024
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Commits on Aug 7, 2024

  1. update directory structure

    @atrigila
    atrigila committed Aug 7, 2024
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  2. update changelog

    @atrigila
    atrigila committed Aug 7, 2024
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  3. Merge pull request #229 from atrigila/fix_dir_structure 

    Fix directory structure for nf-tests
    @nschcolnicov
    nschcolnicov authored Aug 7, 2024
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  4. Pulled from dev

    zxBIB Schcolnicov committed Aug 7, 2024
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  5. Updated version of bcl2fastq snap

    zxBIB Schcolnicov committed Aug 7, 2024
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  6. Merge pull request #220 from nschcolnicov/add_kraken_step_aratz 

    Add kraken step aratz
    @nschcolnicov
    nschcolnicov authored Aug 7, 2024
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  7. Pulled from dev

    zxBIB Schcolnicov committed Aug 7, 2024
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  8. Merge branch 'add_sample_two_lanes' of https://github.com/nschcolnico… 

    …v/demultiplex into add_sample_two_lanes
    zxBIB Schcolnicov committed Aug 7, 2024
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  9. Merge pull request #225 from nschcolnicov/add_sample_two_lanes 

    Add sample two lanes
    @nschcolnicov
    nschcolnicov authored Aug 7, 2024
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Commits on Aug 8, 2024

  1. update checkqc

    @atrigila
    atrigila committed Aug 8, 2024
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  2. fix demux name error

    @atrigila
    atrigila committed Aug 8, 2024
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  3. update changelog

    @atrigila
    atrigila committed Aug 8, 2024
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  4. emit outputs in checkqc report directory

    @atrigila
    atrigila committed Aug 8, 2024
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  5. Started adding samplesheet validator

    zxBIB Schcolnicov committed Aug 8, 2024
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  6. Fixed module execution

    zxBIB Schcolnicov committed Aug 8, 2024
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  7. Merge pull request #231 from atrigila/update_checkqc 

    update checkqc
    @atrigila
    atrigila authored Aug 8, 2024
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  8. Updated docs, schema and module

    zxBIB Schcolnicov committed Aug 8, 2024
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  9. Remove testing line

    zxBIB Schcolnicov committed Aug 8, 2024
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  10. Ran precommit, updated changelog

    @nschcolnicov
    nschcolnicov committed Aug 8, 2024
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  11. Merge branch 'dev' of https://github.com/nf-core/demultiplex into sam… 

    …plesheet_validator
    @nschcolnicov
    nschcolnicov committed Aug 8, 2024
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  12. Reverted change to default kraken_db:

    zxBIB Schcolnicov committed Aug 8, 2024
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  13. Updated container to wave

    zxBIB Schcolnicov committed Aug 8, 2024
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  14. Fixed tests

    zxBIB Schcolnicov committed Aug 8, 2024
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  15. fixing bcl2fastq test

    @nschcolnicov
    nschcolnicov committed Aug 8, 2024
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  16. Fixed linting

    @nschcolnicov
    nschcolnicov committed Aug 8, 2024
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  17. build: Add environment.yml

    @edmundmiller
    edmundmiller committed Aug 8, 2024
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  18. ci: Try using new CI from official nf-test tutorial 

    https://www.nf-test.com/tutorials/github-actions/
    @edmundmiller
    edmundmiller committed Aug 8, 2024
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  19. ci: Only test pipeline and subworkflows for now

    @edmundmiller
    edmundmiller committed Aug 8, 2024
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  20. style: Make it more readable

    @edmundmiller
    edmundmiller committed Aug 8, 2024
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  21. fixup! subworkflows => workflows

    @edmundmiller
    edmundmiller committed Aug 8, 2024
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  22. ci: Actually use the nf-test version

    @edmundmiller
    edmundmiller committed Aug 8, 2024
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Commits on Aug 9, 2024

  1. ci: Define total shards to avoid version issues

    @edmundmiller
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  2. ci: Use setup-nf-test

    @edmundmiller
    edmundmiller committed Aug 9, 2024
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  3. Apply suggestions from code review 

    Co-authored-by: Edmund Miller <[email protected]>
    @apeltzer @edmundmiller
    apeltzer and edmundmiller authored Aug 9, 2024
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  4. Added versions.yml

    zxBIB Schcolnicov committed Aug 9, 2024
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  5. Updated kraken snap to work with CI

    @nschcolnicov
    nschcolnicov committed Aug 9, 2024
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  6. Added resource definitions to nf-tests

    @nschcolnicov
    nschcolnicov committed Aug 9, 2024
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  7. test: Add explicit config 

    Remove redundant pipeline tag
    @edmundmiller
    edmundmiller committed Aug 9, 2024
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  8. add fastq samplesheet generation

    @atrigila
    atrigila committed Aug 9, 2024
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  9. update tests

    @atrigila
    atrigila committed Aug 9, 2024
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  10. update docs

    @atrigila
    atrigila committed Aug 9, 2024
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  11. update changelog

    @atrigila
    atrigila committed Aug 9, 2024
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  12. update nf-tests

    @atrigila
    atrigila committed Aug 9, 2024
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  13. update kraken snapshot

    @atrigila
    atrigila committed Aug 9, 2024
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  14. improve docs section

    @atrigila
    atrigila committed Aug 9, 2024
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  15. docs: rearrange sections for clarity

    @atrigila
    atrigila committed Aug 9, 2024
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  16. Associated configs to nftests

    @nschcolnicov
    nschcolnicov committed Aug 9, 2024
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  17. Updated citations and readme, renamed module

    zxBIB Schcolnicov committed Aug 9, 2024
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  18. add default samplesheet

    @atrigila
    atrigila committed Aug 9, 2024
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  19. add nf-test to samplesheet generation

    @atrigila
    atrigila committed Aug 9, 2024
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Commits on Aug 10, 2024

  1. Merge pull request #236 from atrigila/add_samplesheet_generation

    @apeltzer
    apeltzer authored Aug 10, 2024
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  2. Merge branch 'dev' into samplesheet_validator

    @apeltzer
    apeltzer authored Aug 10, 2024
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Commits on Aug 12, 2024

  1. Merge pull request #234 from nschcolnicov/samplesheet_validator 

    Samplesheet validator
    @apeltzer
    apeltzer authored Aug 12, 2024
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  2. Fix lint

    @apeltzer
    apeltzer committed Aug 12, 2024
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  3. Add versions to csv2tsv module

    @apeltzer
    apeltzer committed Aug 12, 2024
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  4. Update test to include sed version

    @apeltzer
    apeltzer committed Aug 12, 2024
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  5. PR comments

    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  6. Merge pull request #238 from nf-core/samplesheet-validator 

    Samplesheet Validator
    @apeltzer
    apeltzer authored Aug 12, 2024
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  7. remove publishdir from config

    @atrigila
    atrigila committed Aug 12, 2024
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  8. Added cache=false to multiqc:

    zxBIB Schcolnicov committed Aug 12, 2024
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  9. Merge pull request #239 from nschcolnicov/multiqc 

    Added cache=false to multiqc:
    @apeltzer
    apeltzer authored Aug 12, 2024
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  10. Updated samshee

    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  11. Update conf/modules.config 

    Co-authored-by: Alexander Peltzer <[email protected]>
    @nschcolnicov @apeltzer
    nschcolnicov and apeltzer authored Aug 12, 2024
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  12. Revert "remove publishdir from config" 

    This reverts commit c44e7c8.
    @atrigila
    atrigila committed Aug 12, 2024
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  13. update nf-tests with profile

    @atrigila
    atrigila committed Aug 12, 2024
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  14. fix bclconvert test

    @atrigila
    atrigila committed Aug 12, 2024
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  15. renamed test workflows for better CI traceability

    @atrigila
    atrigila committed Aug 12, 2024
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  16. Updated snap for CI

    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  17. Merge branch 'samshee_improvements' of https://github.com/nf-core/dem… 

    …ultiplex into samshee_improvements
    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  18. change config for profile

    @atrigila
    atrigila committed Aug 12, 2024
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  19. Merge branch 'dev' into fresh-ci

    @atrigila
    atrigila authored Aug 12, 2024
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  20. remove redundant params

    @atrigila
    atrigila committed Aug 12, 2024
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  21. Merge pull request #227 from nf-core/fresh-ci 

    Fresh CI
    @atrigila
    atrigila authored Aug 12, 2024
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  22. Update conf/modules.config 

    Co-authored-by: Edmund Miller <[email protected]>
    @apeltzer @edmundmiller
    apeltzer and edmundmiller authored Aug 12, 2024
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  23. Update skip_tools.nf.test.snap 

    Bump to 0.9.0 everywhere
    @apeltzer
    apeltzer authored Aug 12, 2024
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  24. Bumped tests to nf-test 0.9.0 everywhere

    @apeltzer
    apeltzer committed Aug 12, 2024
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  25. Merge branch 'dev' of https://github.com/nf-core/demultiplex into sam… 

    …shee_improvements
    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  26. Merge branch 'samshee_improvements' of https://github.com/nf-core/dem… 

    …ultiplex into samshee_improvements
    @apeltzer
    apeltzer committed Aug 12, 2024
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  27. Update version of skip nftest

    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  28. Updated nftest version

    @nschcolnicov
    nschcolnicov committed Aug 12, 2024
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  29. Merge pull request #240 from nf-core/samshee_improvements 

    Updated samshee
    @apeltzer
    apeltzer authored Aug 12, 2024
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  30. Bump Release PR

    @apeltzer
    apeltzer committed Aug 12, 2024
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  31. Added Gregor/myself [skip ci]

    @apeltzer
    apeltzer committed Aug 12, 2024
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  32. Typo

    @apeltzer
    apeltzer committed Aug 12, 2024
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  33. Merge pull request #241 from nf-core/bump-1.5.0 

    Bump Release PR for 1.5.0
    @apeltzer
    apeltzer authored Aug 12, 2024
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Commits on Aug 13, 2024

  1. Update two modules

    @apeltzer
    apeltzer committed Aug 13, 2024
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  2. Bump to use nf-schema

    @apeltzer
    apeltzer committed Aug 13, 2024
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  3. Use the latest version already

    @apeltzer
    apeltzer committed Aug 13, 2024
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  4. Lets stay with nf-validation for now

    @apeltzer
    apeltzer committed Aug 13, 2024
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  5. Merge pull request #245 from nf-core/fix-utils 

    Update some modules, upgrade to nf-schema
    @apeltzer
    apeltzer authored Aug 13, 2024
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  6. Removed workflow testing

    @nschcolnicov
    nschcolnicov committed Aug 13, 2024
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  7. Merge pull request #247 from nf-core/remove_workflow_ci_testing 

    Removed workflow testing
    @apeltzer
    apeltzer authored Aug 13, 2024
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  8. Removed customdumpsoftwareversions and updated README.md

    @nschcolnicov
    nschcolnicov committed Aug 13, 2024
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  9. Merge pull request #248 from nf-core/release_pr_comments 

    Removed customdumpsoftwareversions and updated README.md
    @apeltzer
    apeltzer authored Aug 13, 2024
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