change filter_difftable_limma input column names

nf-core · Oct 29, 2024 · 3b398ac · 3b398ac
1 parent c6db7ff
commit 3b398ac
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/subworkflows/local/differential/main.nf b/subworkflows/local/differential/main.nf
@@ -116,8 +116,8 @@ workflow DIFFERENTIAL {
     LIMMA_DIFFERENTIAL(ch_limma.input1, ch_limma.input2)
 
     // filter results
-    ch_logfc = Channel.value([ params.differential_fc_column, params.differential_min_fold_change ])
-    ch_padj = Channel.value([ params.differential_qval_column, params.differential_max_qval ])
+    ch_logfc = Channel.value([ "logFC", params.differential_min_fold_change ])
+    ch_padj = Channel.value([ "adj.P.Val", params.differential_max_qval ])
     FILTER_DIFFTABLE_LIMMA(
         LIMMA_DIFFERENTIAL.out.results,
         ch_logfc,