Merge pull request #176 from nf-core/bump_shinyngs

Bump shinyngs
nf-core · Oct 19, 2023 · 763b5e9 · 763b5e9
2 parents f2431bb + a321afa
commit 763b5e9
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Showing 7 changed files with 19 additions and 18 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[#119](https://github.com/nf-core/differentialabundance/issues/119)] - Document sample sheet for Affy arrays ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
 - [[#165](https://github.com/nf-core/differentialabundance/issues/165)] - Update subway map ([@pinin4fjords](https://github.com/pinin4fjords), review by [@FriederikeHanssen](https://github.com/FriederikeHanssen))
 - [[#135](https://github.com/nf-core/differentialabundance/issues/135)] - workaround OPENBLAS using all cores problem ([@pinin4fjords](https://github.com/pinin4fjords), review by [@sateeshperi](https://github.com/sateeshperi))
+- [[#176](https://github.com/nf-core/differentialabundance/pull/176)] - bump shinyngs ([@pinin4fjords](https://github.com/pinin4fjords), review by )
 
 ### `Fixed`
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -390,8 +390,8 @@ process {
     }
 
     withName: RMARKDOWNNOTEBOOK {
-        conda = "bioconda::r-shinyngs=1.8.2"
-        container = { "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/r-shinyngs:1.8.2--r43hdfd78af_0' : 'quay.io/biocontainers/r-shinyngs:1.8.2--r43hdfd78af_0' }" }
+        conda = "bioconda::r-shinyngs=1.8.4"
+        container = { "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/r-shinyngs:1.8.4--r43hdfd78af_0' : 'biocontainers/r-shinyngs:1.8.4--r43hdfd78af_0' }" }
         publishDir = [
             path: { "${params.outdir}/report" },
             mode: params.publish_dir_mode,

diff --git a/modules.json b/modules.json
@@ -72,22 +72,22 @@
                     },
                     "shinyngs/app": {
                         "branch": "master",
-                        "git_sha": "707c31e838cb77198e30d8eeb138728ce09a4dd2",
+                        "git_sha": "1b2fa2138849ac09b3d5c1e25ed70650ec1ebd7b",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/staticdifferential": {
                         "branch": "master",
-                        "git_sha": "022afb76b0fc7e304b0061a648f8f6cef03bba95",
+                        "git_sha": "1b2fa2138849ac09b3d5c1e25ed70650ec1ebd7b",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/staticexploratory": {
                         "branch": "master",
-                        "git_sha": "022afb76b0fc7e304b0061a648f8f6cef03bba95",
+                        "git_sha": "1b2fa2138849ac09b3d5c1e25ed70650ec1ebd7b",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/validatefomcomponents": {
                         "branch": "master",
-                        "git_sha": "022afb76b0fc7e304b0061a648f8f6cef03bba95",
+                        "git_sha": "1b2fa2138849ac09b3d5c1e25ed70650ec1ebd7b",
                         "installed_by": ["modules"]
                     },
                     "untar": {

diff --git a/modules/nf-core/shinyngs/app/main.nf b/modules/nf-core/shinyngs/app/main.nf
diff --git a/modules/nf-core/shinyngs/staticdifferential/main.nf b/modules/nf-core/shinyngs/staticdifferential/main.nf
diff --git a/modules/nf-core/shinyngs/staticexploratory/main.nf b/modules/nf-core/shinyngs/staticexploratory/main.nf
diff --git a/modules/nf-core/shinyngs/validatefomcomponents/main.nf b/modules/nf-core/shinyngs/validatefomcomponents/main.nf