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fix linting
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Breeshey Roskams-Hieter authored and Breeshey Roskams-Hieter committed Oct 30, 2024
1 parent d6da7ad commit a2ddd8a
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions subworkflows/local/differential/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -94,15 +94,15 @@ workflow DIFFERENTIAL {
pathway: [ meta, pathway ]
}
.set { ch_deseq2 }

// do we need this process DESEQ2_NORM?
DESEQ2_NORM (
ch_deseq2.contrast.first(),
ch_deseq2.samplesheet,
ch_deseq2.control_features,
ch_deseq2.transcript_lengths
)

DESEQ2_DIFFERENTIAL (
ch_deseq2.contrast,
ch_deseq2.samplesheet,
Expand Down Expand Up @@ -133,7 +133,7 @@ workflow DIFFERENTIAL {
ch_logfc_deseq2,
ch_padj_deseq2
)

ch_results_genewise = DESEQ2_DIFFERENTIAL.out.results
.join(ch_deseq2.pathway).map(correct_meta_data).mix(ch_results_genewise)

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